The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 2: 60S ribosomal protein L28

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 7 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
15 P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS)
(5 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
12 P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA)
(2 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
12 P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS)
(2 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
12 P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS)
(2 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
12 P46779 (/IPI) P46779 (/IPI) P46779 (/IPI) P46779 (/IPI) P46779 (/IPI) P46779 (/IPI) P46779 (/IPI) P46779 (/IPI) P46779 (/IPI) P46779 (/IPI)
(2 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
4 O82204 (/IDA) O82204 (/IDA) Q9M0E2 (/IDA) Q9M0E2 (/IDA)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
1 O14069 (/ISS)

There are 10 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
12 P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS)
(2 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
12 P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS) P46779 (/NAS)
(2 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
12 P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS)
(2 more)
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
12 P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS)
(2 more)
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
12 P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS)
(2 more)
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
12 P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS)
(2 more)
Chordate embryonic development GO:0043009
The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching.
4 A0A286YBP4 (/IMP) B5DDU6 (/IMP) F1QFV6 (/IMP) Q7SXI9 (/IMP)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
3 Q9VZS5 (/TAS) Q9VZS5 (/TAS) Q9VZS5 (/TAS)
Response to cytokinin GO:0009735
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.
2 O82204 (/IDA) O82204 (/IDA)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
1 O14069 (/ISS)

There are 20 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
15 P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS)
(5 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
12 P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS) P46779 (/TAS)
(2 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
12 P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA)
(2 more)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
12 P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA)
(2 more)
Dendrite GO:0030425
A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
12 P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA)
(2 more)
Cytoplasmic ribonucleoprotein granule GO:0036464
A ribonucleoprotein granule located in the cytoplasm.
12 P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA)
(2 more)
Cell body GO:0044297
The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections.
12 P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA) P46779 (/IDA)
(2 more)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
12 P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA) P46779 (/HDA)
(2 more)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
8 P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO)
Dendrite GO:0030425
A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
8 P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO)
Cytoplasmic ribonucleoprotein granule GO:0036464
A ribonucleoprotein granule located in the cytoplasm.
8 P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO)
Cell body GO:0044297
The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections.
8 P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO) P41105 (/ISO)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
5 O82204 (/IDA) O82204 (/IDA) P17702 (/IDA) Q9M0E2 (/IDA) Q9M0E2 (/IDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
4 O82204 (/IDA) O82204 (/IDA) Q9M0E2 (/IDA) Q9M0E2 (/IDA)
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
4 O82204 (/IDA) O82204 (/IDA) Q9M0E2 (/IDA) Q9M0E2 (/IDA)
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
2 O82204 (/IDA) O82204 (/IDA)
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
2 O82204 (/IDA) O82204 (/IDA)
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
2 O82204 (/IDA) O82204 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 O14069 (/HDA)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
1 O14069 (/ISS)