The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 5: DNA gyrase subunit B

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 10 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA supercoiling activity GO:0034335
Catalytic introduction of supercoils in a DNA molecule or region thereof. In bacteria, negative supercoils are only introduced by DNA gyrase, a type II topoisomerase, but not all DNA gyrases are capable of introducing supercoils. In bacteria, the level of supercoiling varies widely between species and has been characterized properly in only a handful of organisms. The best characterized enzyme, from E.coli, is exceptionally proficient at supercoiling and this ability is not representative of all bacteria.
132 A0A0G2Q9D6 (/IDA) A0A0G2Q9D6 (/IDA) A0A0G2Q9D6 (/IDA) A0A0G2Q9D6 (/IDA) A0QNE0 (/IDA) A0QNE0 (/IDA) A0QNE0 (/IDA) C5C7X8 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA)
(122 more)
DNA topoisomerase type II (ATP-hydrolyzing) activity GO:0003918
Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
118 C5C7X8 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA)
(108 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
117 P0AES6 (/IPI) P0AES6 (/IPI) P0AES6 (/IPI) P0AES6 (/IPI) P0AES6 (/IPI) P0AES6 (/IPI) P0AES6 (/IPI) P0AES6 (/IPI) P0AES6 (/IPI) P0AES6 (/IPI)
(107 more)
ATP binding GO:0005524
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
117 P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA)
(107 more)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
112 P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA)
(102 more)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
112 P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP)
(102 more)
DNA-dependent ATPase activity GO:0008094
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
112 P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA)
(102 more)
DNA topoisomerase activity GO:0003916
Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA.
6 Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS)
DNA topoisomerase type II (ATP-hydrolyzing) activity GO:0003918
Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
6 Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS)
Magnesium ion binding GO:0000287
Interacting selectively and non-covalently with magnesium (Mg) ions.
5 P9WG45 (/IDA) P9WG45 (/IDA) P9WG45 (/IDA) P9WG45 (/IDA) P9WG45 (/IDA)

There are 4 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA topological change GO:0006265
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
112 P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP)
(102 more)
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
112 P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP) P0AES6 (/IMP)
(102 more)
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
112 P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA)
(102 more)
DNA topological change GO:0006265
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
6 Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS)

There are 8 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA topoisomerase complex (ATP-hydrolyzing) GO:0009330
Complex that possesses DNA topoisomerase (ATP-hydrolyzing) activity.
113 O67137 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA)
(103 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
112 P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA)
(102 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
112 P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA) P0AES6 (/IDA)
(102 more)
DNA topoisomerase complex (ATP-hydrolyzing) GO:0009330
Complex that possesses DNA topoisomerase (ATP-hydrolyzing) activity.
6 Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS) Q9KVX3 (/ISS)
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
5 P9WG45 (/HDA) P9WG45 (/HDA) P9WG45 (/HDA) P9WG45 (/HDA) P9WG45 (/HDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
5 P9WG45 (/HDA) P9WG45 (/HDA) P9WG45 (/HDA) P9WG45 (/HDA) P9WG45 (/HDA)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
1 Q94BZ7 (/IDA)
DNA topoisomerase complex (ATP-hydrolyzing) GO:0009330
Complex that possesses DNA topoisomerase (ATP-hydrolyzing) activity.
1 O67137 (/IPI)
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