The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Classic Zinc Finger
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 118: Ataxin-7-like protein 3

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 7 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
12 Q03067 (/IPI) Q03067 (/IPI) Q03067 (/IPI) Q03067 (/IPI) Q03067 (/IPI) Q14CW9 (/IPI) Q14CW9 (/IPI) Q14CW9 (/IPI) Q14CW9 (/IPI) Q14CW9 (/IPI)
(2 more)
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
6 Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA)
Nuclear receptor transcription coactivator activity GO:0030374
The function of a transcription cofactor that activates transcription in conjuction with a ligand-dependent nuclear receptor from a RNA polymerase II promoter; does not bind DNA itself.
6 Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA)
Enzyme activator activity GO:0008047
Binds to and increases the activity of an enzyme.
5 Q03067 (/IDA) Q03067 (/IDA) Q03067 (/IDA) Q03067 (/IDA) Q03067 (/IDA)
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
2 A1L209 (/ISS) A2AWT3 (/ISS)
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
1 A2AWT3 (/ISO)
Nuclear receptor transcription coactivator activity GO:0030374
The function of a transcription cofactor that activates transcription in conjuction with a ligand-dependent nuclear receptor from a RNA polymerase II promoter; does not bind DNA itself.
1 A2AWT3 (/ISO)

There are 18 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
18 A1L209 (/ISS) A2AWT3 (/ISS) B3M881 (/ISS) B3NHQ1 (/ISS) B4GZZ4 (/ISS) B4GZZ4 (/ISS) B4IFU5 (/ISS) B4J1U4 (/ISS) B4J1U5 (/ISS) B4KY72 (/ISS)
(8 more)
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
16 B3M881 (/ISS) B3NHQ1 (/ISS) B4GZZ4 (/ISS) B4GZZ4 (/ISS) B4IFU5 (/ISS) B4J1U4 (/ISS) B4J1U5 (/ISS) B4KY72 (/ISS) B4LDA6 (/ISS) B4MVH6 (/ISS)
(6 more)
Histone deubiquitination GO:0016578
The modification of histones by removal of ubiquitin groups.
7 Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q9VVR6 (/IDA)
Histone monoubiquitination GO:0010390
The modification of histones by addition of a single ubiquitin group.
6 Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA)
Histone deubiquitination GO:0016578
The modification of histones by removal of ubiquitin groups.
6 Q03067 (/IMP) Q03067 (/IMP) Q03067 (/IMP) Q03067 (/IMP) Q03067 (/IMP) Q9VVR6 (/IMP)
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
6 Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA)
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
5 Q03067 (/IMP) Q03067 (/IMP) Q03067 (/IMP) Q03067 (/IMP) Q03067 (/IMP)
Histone deubiquitination GO:0016578
The modification of histones by removal of ubiquitin groups.
2 A2AWT3 (/ISO) Q5FC18 (/ISO)
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
1 Q9VVR6 (/IMP)
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
1 Q5FC18 (/IC)
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
1 Q9VVR6 (/IMP)
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
1 Q5FC18 (/EXP)
Histone monoubiquitination GO:0010390
The modification of histones by addition of a single ubiquitin group.
1 A2AWT3 (/ISO)
Histone monoubiquitination GO:0010390
The modification of histones by addition of a single ubiquitin group.
1 A2AWT3 (/ISS)
Histone acetylation GO:0016573
The modification of a histone by the addition of an acetyl group.
1 Q5FC18 (/IC)
Histone H2B conserved C-terminal lysine deubiquitination GO:0035616
A histone deubiquitination process in which a ubiquitin monomer is removed from a conserved lysine residue in the C-terminus of histone H2B. The conserved lysine residue is K119 in fission yeast, K123 in budding yeast, or K120 in mammals.
1 Q94BV2 (/IMP)
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
1 Q9VVR6 (/IMP)
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
1 A2AWT3 (/ISO)

There are 11 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
SAGA complex GO:0000124
A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8.
18 A1L209 (/ISS) A2AWT3 (/ISS) B3M881 (/ISS) B3NHQ1 (/ISS) B4GZZ4 (/ISS) B4GZZ4 (/ISS) B4IFU5 (/ISS) B4J1U4 (/ISS) B4J1U5 (/ISS) B4KY72 (/ISS)
(8 more)
SAGA complex GO:0000124
A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8.
13 Q03067 (/IDA) Q03067 (/IDA) Q03067 (/IDA) Q03067 (/IDA) Q03067 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA)
(3 more)
DUBm complex GO:0071819
A protein complex that forms part of SAGA-type complexes SAGA and SLIK, and mediates deubiquitination of histone H2B. In S. cerevisiae, the DUBm consists of the proteins Ubp8p, Sgf11p, Sus1p, and Sgf73p.
12 Q03067 (/IDA) Q03067 (/IDA) Q03067 (/IDA) Q03067 (/IDA) Q03067 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA)
(2 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
7 Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q14CW9 (/IDA) Q9VVR6 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
5 Q03067 (/HDA) Q03067 (/HDA) Q03067 (/HDA) Q03067 (/HDA) Q03067 (/HDA)
SAGA complex GO:0000124
A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8.
1 Q5FC18 (/IPI)
SAGA complex GO:0000124
A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8.
1 A2AWT3 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 A2AWT3 (/ISO)
SAGA-type complex GO:0070461
A histone acetyltransferase complex that acetylates nucleosomal H3 and H2B and is required for the expression of a subset of Pol II-transcribed genes. The budding yeast complex includes the acetyltransferase Gcn5p, several proteins of the Spt and Ada families, and several TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins.
1 Q94BV2 (/IPI)
DUBm complex GO:0071819
A protein complex that forms part of SAGA-type complexes SAGA and SLIK, and mediates deubiquitination of histone H2B. In S. cerevisiae, the DUBm consists of the proteins Ubp8p, Sgf11p, Sus1p, and Sgf73p.
1 Q94BV2 (/IPI)
DUBm complex GO:0071819
A protein complex that forms part of SAGA-type complexes SAGA and SLIK, and mediates deubiquitination of histone H2B. In S. cerevisiae, the DUBm consists of the proteins Ubp8p, Sgf11p, Sus1p, and Sgf73p.
1 A2AWT3 (/ISO)
CATH-Gene3D is a Global Biodata Core Resource Learn more...