The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: 50S ribosomal protein L5

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 4 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
5S rRNA binding GO:0008097
Interacting selectively and non-covalently with 5S ribosomal RNA, the smallest RNA constituent of a ribosome.
235 P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA)
(225 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
17 Q3Z969 (/ISS) Q3Z969 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS)
(7 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
5 P36519 (/IDA) P36519 (/IDA) P36519 (/IDA) P36519 (/IDA) P36519 (/IDA)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
1 O14337 (/ISO)

There are 6 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Ribosomal large subunit assembly GO:0000027
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
235 P62399 (/IMP) P62399 (/IMP) P62399 (/IMP) P62399 (/IMP) P62399 (/IMP) P62399 (/IMP) P62399 (/IMP) P62399 (/IMP) P62399 (/IMP) P62399 (/IMP)
(225 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
15 Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS)
(5 more)
Ribosome biogenesis GO:0042254
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
10 Q3Z969 (/ISS) Q3Z969 (/ISS) Q5HSA2 (/ISS) Q5HSA2 (/ISS) Q5HSA2 (/ISS) Q5HSA2 (/ISS) Q5HSA2 (/ISS) Q5HSA2 (/ISS) Q5HSA2 (/ISS) Q5HSA2 (/ISS)
Mitochondrial translation GO:0032543
The chemical reactions and pathways resulting in the formation of a protein in a mitochondrion. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein; the mitochondrion has its own ribosomes and transfer RNAs, and uses a genetic code that differs from the nuclear code.
5 P36519 (/IC) P36519 (/IC) P36519 (/IC) P36519 (/IC) P36519 (/IC)
Response to cytokinin GO:0009735
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.
2 O04603 (/IDA) O04603 (/IDA)
Mitochondrial translation GO:0032543
The chemical reactions and pathways resulting in the formation of a protein in a mitochondrion. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein; the mitochondrion has its own ribosomes and transfer RNAs, and uses a genetic code that differs from the nuclear code.
1 O14337 (/ISO)

There are 13 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
235 P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA)
(225 more)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
235 P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA) P62399 (/IDA)
(225 more)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
19 Q81VR8 (/ISS) Q81VR8 (/ISS) Q81VR8 (/ISS) Q81VR8 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS) Q9KNZ6 (/ISS)
(9 more)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
13 P9WH83 (/HDA) P9WH83 (/HDA) P9WH83 (/HDA) P9WH83 (/HDA) P9WH83 (/HDA) P9WH83 (/HDA) P9WH83 (/HDA) P9WH83 (/HDA) P9WH83 (/HDA) P9WH83 (/HDA)
(3 more)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
6 O14337 (/HDA) P36519 (/HDA) P36519 (/HDA) P36519 (/HDA) P36519 (/HDA) P36519 (/HDA)
Mitochondrial large ribosomal subunit GO:0005762
The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site).
5 P36519 (/IDA) P36519 (/IDA) P36519 (/IDA) P36519 (/IDA) P36519 (/IDA)
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
2 O04603 (/IDA) O04603 (/IDA)
Chloroplast stroma GO:0009570
The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
2 O04603 (/IDA) O04603 (/IDA)
Chloroplast envelope GO:0009941
The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space.
2 O04603 (/IDA) O04603 (/IDA)
Large ribosomal subunit GO:0015934
The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
2 Q3Z969 (/ISS) Q3Z969 (/ISS)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
2 O04603 (/IDA) O04603 (/IDA)
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
2 O04603 (/IDA) O04603 (/IDA)
Mitochondrial large ribosomal subunit GO:0005762
The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site).
1 O14337 (/ISO)
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