The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Ribosomal protein L30, ferredoxin-like fold domain
".
FunFam 4: 60S ribosomal protein L7
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 6 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
13 |
F4IT48 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P60040 (/IDA)
P60040 (/IDA)
(3 more) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
8 | F4IT48 (/IDA) P60040 (/IDA) P60040 (/IDA) Q57V35 (/IDA) Q57V37 (/IDA) Q57V37 (/IDA) Q57V37 (/IDA) Q57V37 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
8 | O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
5 | Q57V35 (/ISM) Q57V37 (/ISM) Q57V37 (/ISM) Q57V37 (/ISM) Q57V37 (/ISM) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
4 | Q12213 (/IC) Q12213 (/IC) Q12213 (/IC) Q12213 (/IC) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
1 | P25457 (/ISO) |
There are 10 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Maturation of LSU-rRNA GO:0000470
Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule.
|
11 |
P05737 (/IMP)
P05737 (/IMP)
P05737 (/IMP)
P05737 (/IMP)
P05737 (/IMP)
P05737 (/IMP)
P05737 (/IMP)
Q12213 (/IMP)
Q12213 (/IMP)
Q12213 (/IMP)
(1 more) |
Ribosomal large subunit biogenesis GO:0042273
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a large ribosomal subunit; includes transport to the sites of protein synthesis.
|
11 |
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
Q12213 (/IDA)
Q12213 (/IDA)
Q12213 (/IDA)
(1 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
8 | O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
7 | P05737 (/IDA) P05737 (/IDA) P05737 (/IDA) P05737 (/IDA) P05737 (/IDA) P05737 (/IDA) P05737 (/IDA) |
Ribosome biogenesis GO:0042254
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
|
5 | Q57V35 (/ISM) Q57V37 (/ISM) Q57V37 (/ISM) Q57V37 (/ISM) Q57V37 (/ISM) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
4 | Q12213 (/IC) Q12213 (/IC) Q12213 (/IC) Q12213 (/IC) |
Endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000447
Endonucleolytic cleavage between the SSU-rRNA and the 5.8S rRNA of an rRNA molecule originally produced as a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript.
|
1 | O60143 (/IDA) |
Blastocyst formation GO:0001825
The initial formation of a blastocyst from a solid ball of cells known as a morula.
|
1 | Q9D8M4 (/IMP) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
1 | P25457 (/ISO) |
Endonucleolytic cleavage involved in tRNA processing GO:1905267
Any endonucleolytic RNA phosphodiester bond hydrolysis that is involved in tRNA processing.
|
1 | O60143 (/IDA) |
There are 24 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
17 |
F4IT48 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P60040 (/IDA)
P60040 (/IDA)
(7 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
15 |
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
P05737 (/IDA)
Q12213 (/IDA)
Q12213 (/IDA)
Q12213 (/IDA)
(5 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
9 | F4IT48 (/IDA) Q12213 (/IDA) Q12213 (/IDA) Q12213 (/IDA) Q12213 (/IDA) Q9D8M4 (/IDA) Q9SAI5 (/IDA) Q9SAI5 (/IDA) Q9SAI5 (/IDA) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
8 | O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) O97250 (/ISS) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
6 | F4IT48 (/IDA) P60040 (/IDA) P60040 (/IDA) Q9SAI5 (/IDA) Q9SAI5 (/IDA) Q9SAI5 (/IDA) |
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
|
5 | Q57V35 (/ISM) Q57V37 (/ISM) Q57V37 (/ISM) Q57V37 (/ISM) Q57V37 (/ISM) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
3 | O60143 (/HDA) P17937 (/HDA) P25457 (/HDA) |
Vacuole GO:0005773
A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.
|
3 | F4IT48 (/IDA) P60040 (/IDA) P60040 (/IDA) |
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
|
3 | F4IT48 (/IDA) P60040 (/IDA) P60040 (/IDA) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
3 | F4IT48 (/IDA) P60040 (/IDA) P60040 (/IDA) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
3 | F4IT48 (/IDA) P60040 (/IDA) P60040 (/IDA) |
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
|
3 | F4IT48 (/IDA) P60040 (/IDA) P60040 (/IDA) |
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
2 | P60040 (/IDA) P60040 (/IDA) |
Vacuolar membrane GO:0005774
The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell.
|
2 | P60040 (/IDA) P60040 (/IDA) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
2 | P60040 (/IDA) P60040 (/IDA) |
Ribonuclease MRP complex GO:0000172
A ribonucleoprotein complex that contains an RNA molecule of the snoRNA family, and cleaves the rRNA precursor as part of rRNA transcript processing. It also has other roles: In S. cerevisiae it is involved in cell cycle-regulated degradation of daughter cell-specific mRNAs, while in mammalian cells it also enters the mitochondria and processes RNAs to create RNA primers for DNA replication.
|
1 | O60143 (/EXP) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O60143 (/HDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | P25457 (/HDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q4Q9H4 (/ISO) |
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
|
1 | F4IT48 (/IDA) |
Cell surface GO:0009986
The external part of the cell wall and/or plasma membrane.
|
1 | A0A1D8PDL6 (/IDA) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
1 | P25457 (/ISO) |
Preribosome, large subunit precursor GO:0030687
A preribosomal complex consisting of 27SA, 27SB, and/or 7S pre-rRNA, 5S rRNA, ribosomal proteins including late-associating large subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic large ribosomal subunit.
|
1 | P17937 (/ISO) |
Extracellular matrix GO:0031012
A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
|
1 | P11874 (/HDA) |