The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 2: DNA gyrase subunit A

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 11 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA supercoiling activity GO:0034335
Catalytic introduction of supercoils in a DNA molecule or region thereof. In bacteria, negative supercoils are only introduced by DNA gyrase, a type II topoisomerase, but not all DNA gyrases are capable of introducing supercoils. In bacteria, the level of supercoiling varies widely between species and has been characterized properly in only a handful of organisms. The best characterized enzyme, from E.coli, is exceptionally proficient at supercoiling and this ability is not representative of all bacteria.
84 A0A0G2Q9F8 (/IDA) A0A0G2Q9F8 (/IDA) A0A0G2Q9F8 (/IDA) A0A0G2Q9F8 (/IDA) A0A0G2Q9F8 (/IDA) A0A0G2Q9F8 (/IDA) C5C7X9 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(74 more)
DNA topoisomerase type II (ATP-hydrolyzing) activity GO:0003918
Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
75 C5C7X9 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(65 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
74 P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI)
(64 more)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
72 P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(62 more)
DNA-dependent ATPase activity GO:0008094
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
72 P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(62 more)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
72 P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI)
(62 more)
DNA topoisomerase activity GO:0003916
Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA.
6 Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS)
DNA topoisomerase type II (ATP-hydrolyzing) activity GO:0003918
Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
6 Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS)
Magnesium ion binding GO:0000287
Interacting selectively and non-covalently with magnesium (Mg) ions.
2 P9WG47 (/IDA) P9WG47 (/IDA)
ATP binding GO:0005524
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
2 P9WG47 (/IDA) P9WG47 (/IDA)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
2 P9WG47 (/IDA) P9WG47 (/IDA)

There are 6 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA topological change GO:0006265
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
72 P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP)
(62 more)
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
72 P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(62 more)
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
72 P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP)
(62 more)
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
72 P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP)
(62 more)
DNA topological change GO:0006265
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
6 Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS)
DNA topological change GO:0006265
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
2 P9WG47 (/IDA) P9WG47 (/IDA)

There are 12 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
72 P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA)
(62 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
72 P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(62 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
72 P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(62 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
72 P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA)
(62 more)
DNA topoisomerase complex (ATP-hydrolyzing) GO:0009330
Complex that possesses DNA topoisomerase (ATP-hydrolyzing) activity.
6 Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS)
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
2 P9WG47 (/HDA) P9WG47 (/HDA)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
2 Q9CAF6 (/IDA) Q9CAF6 (/IDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
2 P9WG47 (/HDA) P9WG47 (/HDA)
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
2 Q9CAF6 (/IDA) Q9CAF6 (/IDA)
Mediator complex GO:0016592
A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.
2 Q9CAF6 (/IDA) Q9CAF6 (/IDA)
Chloroplast nucleoid GO:0042644
The region of a chloroplast to which the DNA is confined.
2 Q9CAF6 (/IDA) Q9CAF6 (/IDA)
DNA topoisomerase complex (ATP-hydrolyzing) GO:0009330
Complex that possesses DNA topoisomerase (ATP-hydrolyzing) activity.
1 O67108 (/IPI)
CATH-Gene3D is a Global Biodata Core Resource Learn more...