The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"RNA-binding S4 domain
".
FunFam 1: 30S ribosomal protein S4
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 6 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Translation repressor activity, mRNA regulatory element binding GO:0000900
Antagonizes the ribosome-mediated translation of mRNA into a polypeptide via direct binding (through a selective and non-covalent interaction) to nucleic acid.
|
188 |
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
(178 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
188 |
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
(178 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
188 |
P0A7V8 (/IPI)
P0A7V8 (/IPI)
P0A7V8 (/IPI)
P0A7V8 (/IPI)
P0A7V8 (/IPI)
P0A7V8 (/IPI)
P0A7V8 (/IPI)
P0A7V8 (/IPI)
P0A7V8 (/IPI)
P0A7V8 (/IPI)
(178 more) |
RRNA binding GO:0019843
Interacting selectively and non-covalently with ribosomal RNA.
|
188 |
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
(178 more) |
MRNA 5'-UTR binding GO:0048027
Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.
|
188 |
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
(178 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
9 | Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) |
There are 8 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Ribosomal small subunit assembly GO:0000028
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.
|
188 |
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
(178 more) |
Transcription antitermination GO:0031564
Regulation of transcription by a mechanism that allows RNA polymerase to continue transcription beyond termination site(s).
|
188 |
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
(178 more) |
Negative regulation of translational initiation GO:0045947
Any process that stops, prevents, or reduces the frequency, rate or extent of translational initiation.
|
188 |
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
(178 more) |
Maintenance of translational fidelity GO:1990145
Suppression of the occurrence of translational errors, such as codon-anticodon mis-paring, during the process of translation of a protein using an mRNA template.
|
188 |
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
P0A7V8 (/IMP)
(178 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
9 | Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) |
Aggregation involved in sorocarp development GO:0031152
The process whose specific outcome is the progression of the aggregate over time, from its formation to the point when a slug is formed. Aggregate development begins in response to starvation and continues by the chemoattractant-mediated movement of cells toward each other. The aggregate is a multicellular structure that gives rise to the slug.
|
1 | Q9XPI8 (/IMP) |
Regulation of apoptotic process GO:0042981
Any process that modulates the occurrence or rate of cell death by apoptotic process.
|
1 | Q9XPI8 (/IMP) |
Regulation of cell cycle GO:0051726
Any process that modulates the rate or extent of progression through the cell cycle.
|
1 | Q9XPI8 (/IMP) |
There are 11 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
188 |
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
(178 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
188 |
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
P0A7V8 (/IDA)
(178 more) |
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
12 |
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
(2 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
12 |
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
(2 more) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
12 |
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
P9WH35 (/HDA)
(2 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
9 | Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) Q9KP07 (/ISS) |
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
|
3 | P56799 (/IDA) P56799 (/IDA) P56799 (/IDA) |
Chloroplast stroma GO:0009570
The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
|
3 | P56799 (/IDA) P56799 (/IDA) P56799 (/IDA) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
3 | P56799 (/IDA) P56799 (/IDA) P56799 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q9XPI8 (/IDA) |
Mitochondrial small ribosomal subunit GO:0005763
The smaller of the two subunits of a mitochondrial ribosome.
|
1 | Q9XPI8 (/ISS) |