The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 299: Rad23p

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 5 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Damaged DNA binding GO:0003684
Interacting selectively and non-covalently with damaged DNA.
7 P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
7 P32628 (/IPI) P32628 (/IPI) P32628 (/IPI) P32628 (/IPI) P32628 (/IPI) P32628 (/IPI) P32628 (/IPI)
Protein binding, bridging GO:0030674
The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
7 P32628 (/IPI) P32628 (/IPI) P32628 (/IPI) P32628 (/IPI) P32628 (/IPI) P32628 (/IPI) P32628 (/IPI)
Ubiquitin binding GO:0043130
Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
7 P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA)
Proteasome binding GO:0070628
Interacting selectively and non-covalently with a proteasome, a large multisubunit protein complex that catalyzes protein degradation.
7 P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA)

There are 4 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
7 P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP)
Protein deglycosylation GO:0006517
The removal of sugar residues from a glycosylated protein.
7 P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA)
Ubiquitin-dependent ERAD pathway GO:0030433
The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome.
7 P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP)
Proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043161
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
7 P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP)

There are 4 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleotide-excision repair factor 2 complex GO:0000111
One of several protein complexes involved in nucleotide-excision repair; possesses damaged DNA binding activity. In S. cerevisiae, it is composed of Rad4p and Rad23p.
7 P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA) P32628 (/IDA)
Proteasome complex GO:0000502
A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
7 P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP) P32628 (/IMP)
Proteasome complex GO:0000502
A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
7 P32628 (/IPI) P32628 (/IPI) P32628 (/IPI) P32628 (/IPI) P32628 (/IPI) P32628 (/IPI) P32628 (/IPI)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
7 P32628 (/HDA) P32628 (/HDA) P32628 (/HDA) P32628 (/HDA) P32628 (/HDA) P32628 (/HDA) P32628 (/HDA)
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