The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
PFU (PLAA family ubiquitin binding), C-terminal domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 3: Polyubiquitin binding (Doa1 Ufd3) protein

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 5 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
4 P36037 (/IPI) P36037 (/IPI) P36037 (/IPI) P36037 (/IPI)
Ubiquitin binding GO:0043130
Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
4 P36037 (/IDA) P36037 (/IDA) P36037 (/IDA) P36037 (/IDA)
Ubiquitin binding GO:0043130
Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
4 P36037 (/IMP) P36037 (/IMP) P36037 (/IMP) P36037 (/IMP)
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
4 P36037 (/IMP) P36037 (/IMP) P36037 (/IMP) P36037 (/IMP)
Ubiquitin-dependent protein binding GO:0140036
Interacting selectively and non-covalently with a protein upon ubiquitination of the target protein.
4 P36037 (/IPI) P36037 (/IPI) P36037 (/IPI) P36037 (/IPI)

There are 7 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Double-strand break repair via nonhomologous end joining GO:0006303
The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear.
4 P36037 (/IMP) P36037 (/IMP) P36037 (/IMP) P36037 (/IMP)
Ubiquitin recycling GO:0010992
Any process involved in the maintenance of an internal steady state of ubiquitin monomers and free ubiquitin chains at the level of the cell by recycling ubiquitin from proteasome-bound ubiquitinated intermediates.
4 P36037 (/IMP) P36037 (/IMP) P36037 (/IMP) P36037 (/IMP)
Ribophagy GO:0034517
The selective autophagy process in which cells degrade mature ribosomes under conditions of starvation.
4 P36037 (/IMP) P36037 (/IMP) P36037 (/IMP) P36037 (/IMP)
Proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043161
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
4 P36037 (/IGI) P36037 (/IGI) P36037 (/IGI) P36037 (/IGI)
Proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043161
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
4 P36037 (/IMP) P36037 (/IMP) P36037 (/IMP) P36037 (/IMP)
Mitochondria-associated ubiquitin-dependent protein catabolic process GO:0072671
The chemical reactions and pathways resulting in the breakdown of proteins transported from mitochondria and targeted to cytoplasmic proteasomes for degradation as a response to oxidative stress conditions.
4 P36037 (/IMP) P36037 (/IMP) P36037 (/IMP) P36037 (/IMP)
Cellular protein catabolic process GO:0044257
The chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
1 A2QGV2 (/IMP)

There are 5 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
4 P36037 (/HDA) P36037 (/HDA) P36037 (/HDA) P36037 (/HDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
4 P36037 (/IDA) P36037 (/IDA) P36037 (/IDA) P36037 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
4 P36037 (/HDA) P36037 (/HDA) P36037 (/HDA) P36037 (/HDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
4 P36037 (/IDA) P36037 (/IDA) P36037 (/IDA) P36037 (/IDA)
Cytoplasmic side of mitochondrial outer membrane GO:0032473
The external (cytoplasmic) face of the mitochondrial outer membrane.
4 P36037 (/IDA) P36037 (/IDA) P36037 (/IDA) P36037 (/IDA)
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