CATH Superfamily 2.60.40.720
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 5: p53, isoform E
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 8 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Transcription regulatory region sequence-specific DNA binding GO:0000976
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
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5 | A0A0B4K7P1 (/IDA) Q2XVY7 (/IDA) Q8IH92 (/IDA) Q8IMZ4 (/IDA) Q9N6D8 (/IDA) |
TFIIH-class transcription factor complex binding GO:0001097
Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIIH complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
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5 | A0A0B4K7P1 (/IPI) Q2XVY7 (/IPI) Q8IH92 (/IPI) Q8IMZ4 (/IPI) Q9N6D8 (/IPI) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
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5 | A0A0B4K7P1 (/IPI) Q2XVY7 (/IPI) Q8IH92 (/IPI) Q8IMZ4 (/IPI) Q9N6D8 (/IPI) |
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
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5 | A0A0B4K7P1 (/IPI) Q2XVY7 (/IPI) Q8IH92 (/IPI) Q8IMZ4 (/IPI) Q9N6D8 (/IPI) |
Ubiquitin conjugating enzyme binding GO:0031624
Interacting selectively and non-covalently with a ubiquitin conjugating enzyme, any of the E2 proteins.
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5 | A0A0B4K7P1 (/IPI) Q2XVY7 (/IPI) Q8IH92 (/IPI) Q8IMZ4 (/IPI) Q9N6D8 (/IPI) |
Ubiquitin protein ligase binding GO:0031625
Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
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5 | A0A0B4K7P1 (/IPI) Q2XVY7 (/IPI) Q8IH92 (/IPI) Q8IMZ4 (/IPI) Q9N6D8 (/IPI) |
RNA polymerase II transcription factor binding GO:0001085
Interacting selectively and non-covalently with an RNA polymerase II transcription factor, any protein required to initiate or regulate transcription by RNA polymerase II.
|
1 | Q8IMZ4 (/IPI) |
Promoter-specific chromatin binding GO:1990841
Interacting selectively and non-covalently with a section of chromatin that is associated with gene promoter sequences of DNA.
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1 | Q8IMZ4 (/IDA) |
There are 47 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Regulation of DNA repair GO:0006282
Any process that modulates the frequency, rate or extent of DNA repair.
|
5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
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5 | A0A0B4K7P1 (/TAS) Q2XVY7 (/TAS) Q8IH92 (/TAS) Q8IMZ4 (/TAS) Q9N6D8 (/TAS) |
Apoptotic process GO:0006915
A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Apoptotic process GO:0006915
A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
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5 | A0A0B4K7P1 (/TAS) Q2XVY7 (/TAS) Q8IH92 (/TAS) Q8IMZ4 (/TAS) Q9N6D8 (/TAS) |
Activation of cysteine-type endopeptidase activity involved in apoptotic process GO:0006919
Any process that initiates the activity of the inactive enzyme cysteine-type endopeptidase in the context of an apoptotic process.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Reciprocal meiotic recombination GO:0007131
The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Neuroblast proliferation GO:0007405
The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Cell death GO:0008219
Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as apoptotic bodies). The cell corpse (or its fragments) may be engulfed by an adjacent cell in vivo, but engulfment of whole cells should not be considered a strict criteria to define cell death as, under some circumstances, live engulfed cells can be released from phagosomes (see PMID:18045538).
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Determination of adult lifespan GO:0008340
The control of viability and duration in the adult phase of the life-cycle.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Intrinsic apoptotic signaling pathway in response to DNA damage GO:0008630
A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the detection of DNA damage, and ends when the execution phase of apoptosis is triggered.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Intrinsic apoptotic signaling pathway in response to DNA damage GO:0008630
A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the detection of DNA damage, and ends when the execution phase of apoptosis is triggered.
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5 | A0A0B4K7P1 (/TAS) Q2XVY7 (/TAS) Q8IH92 (/TAS) Q8IMZ4 (/TAS) Q9N6D8 (/TAS) |
Cellular response to starvation GO:0009267
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Response to radiation GO:0009314
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Response to radiation GO:0009314
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
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5 | A0A0B4K7P1 (/TAS) Q2XVY7 (/TAS) Q8IH92 (/TAS) Q8IMZ4 (/TAS) Q9N6D8 (/TAS) |
Response to UV GO:0009411
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Response to ionizing radiation GO:0010212
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Neuroblast differentiation GO:0014016
The process in which a relatively unspecialized cell acquires specialized features of a neuroblast. There are at least four stages through which the pluripotent cells of epiblast or blastula become neuroblasts.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Positive regulation of macroautophagy GO:0016239
Any process, such as recognition of nutrient depletion, that activates or increases the rate of macroautophagy to bring cytosolic macromolecules to the vacuole/lysosome for degradation.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
DNA damage response, signal transduction by p53 class mediator GO:0030330
A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage.
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5 | A0A0B4K7P1 (/TAS) Q2XVY7 (/TAS) Q8IH92 (/TAS) Q8IMZ4 (/TAS) Q9N6D8 (/TAS) |
Ectopic germ cell programmed cell death GO:0035234
Programmed cell death of an errant germ line cell that is outside the normal migratory path or ectopic to the gonad. This is an important mechanism of regulating germ cell survival within the embryo.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Regulation of cell population proliferation GO:0042127
Any process that modulates the frequency, rate or extent of cell proliferation.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Tissue regeneration GO:0042246
The regrowth of lost or destroyed tissues.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Response to starvation GO:0042594
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator GO:0042771
A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage, and ends when the execution phase of apoptosis is triggered.
|
5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator GO:0042771
A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage, and ends when the execution phase of apoptosis is triggered.
|
5 | A0A0B4K7P1 (/TAS) Q2XVY7 (/TAS) Q8IH92 (/TAS) Q8IMZ4 (/TAS) Q9N6D8 (/TAS) |
Positive regulation of cell cycle GO:0045787
Any process that activates or increases the rate or extent of progression through the cell cycle.
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5 | A0A0B4K7P1 (/IGI) Q2XVY7 (/IGI) Q8IH92 (/IGI) Q8IMZ4 (/IGI) Q9N6D8 (/IGI) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
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5 | A0A0B4K7P1 (/IDA) Q2XVY7 (/IDA) Q8IH92 (/IDA) Q8IMZ4 (/IDA) Q9N6D8 (/IDA) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Negative regulation of photoreceptor cell differentiation GO:0046533
Any process that stops, prevents, or reduces the frequency, rate or extent of photoreceptor cell differentiation. An example of this process is found in Drosophila melanogaster.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Regulation of organ growth GO:0046620
Any process that modulates the frequency, rate or extent of growth of an organ of an organism.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Oogenesis GO:0048477
The complete process of formation and maturation of an ovum or female gamete from a primordial female germ cell. Examples of this process are found in Mus musculus and Drosophila melanogaster.
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5 | A0A0B4K7P1 (/IGI) Q2XVY7 (/IGI) Q8IH92 (/IGI) Q8IMZ4 (/IGI) Q9N6D8 (/IGI) |
Regulation of apoptosis involved in tissue homeostasis GO:0060785
Any process that modulates the occurrence or rate of cell death by apoptosis that results in the maintenance of the steady-state number of cells within a tissue.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Regulation of transcription from RNA polymerase II promoter in response to DNA damage GO:1990248
Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of DNA damage.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Positive regulation of cellular response to X-ray GO:2000685
Any process that activates or increases the frequency, rate or extent of cellular response to X-ray.
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5 | A0A0B4K7P1 (/IMP) Q2XVY7 (/IMP) Q8IH92 (/IMP) Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
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2 | Q8IMZ4 (/IMP) Q9N6D8 (/IMP) |
Positive regulation of gene expression GO:0010628
Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
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1 | Q8IMZ4 (/IMP) |
Positive regulation of necrotic cell death GO:0010940
Any process that increases the rate, frequency or extent of necrotic cell death. Necrotic cell death is a cell death process that is morphologically characterized by a gain in cell volume (oncosis), swelling of organelles, plasma membrane rupture and subsequent loss of intracellular contents.
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1 | Q8IMZ4 (/IMP) |
Positive regulation of growth rate GO:0040010
Any process that increases the rate of growth of all or part of an organism.
|
1 | Q9N6D8 (/IMP) |
Positive regulation of multicellular organism growth GO:0040018
Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size.
|
1 | Q9N6D8 (/IMP) |
Positive regulation of protein import into nucleus GO:0042307
Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus.
|
1 | Q9N6D8 (/IMP) |
Intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator GO:0042771
A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage, and ends when the execution phase of apoptosis is triggered.
|
1 | Q8IMZ4 (/IGI) |
Negative regulation of phosphatidylinositol 3-kinase activity GO:0043553
Any process that stops, prevents, or reduces the frequency, rate or extent of phosphatidylinositol 3-kinase activity.
|
1 | Q9N6D8 (/IMP) |
Positive regulation of insulin-like growth factor receptor signaling pathway GO:0043568
Any process that increases the frequency, rate or extent of insulin-like growth factor receptor signaling.
|
1 | Q9N6D8 (/IMP) |
Cellular response to gamma radiation GO:0071480
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum.
|
1 | Q8IMZ4 (/IMP) |
Intrinsic apoptotic signaling pathway by p53 class mediator GO:0072332
A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, and ends when the execution phase of apoptosis is triggered.
|
1 | Q8IMZ4 (/IMP) |
There are 3 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
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5 | A0A0B4K7P1 (/IDA) Q2XVY7 (/IDA) Q8IH92 (/IDA) Q8IMZ4 (/IDA) Q9N6D8 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q8IMZ4 (/HDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q8IMZ4 (/IMP) |