The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"C2 domain
".
FunFam 156: E3 ubiquitin-protein ligase
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 9 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Ubiquitin-protein transferase activity GO:0004842
Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Ubiquitin-protein transferase activity GO:0004842
Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
3 | P39940 (/IPI) P39940 (/IPI) P39940 (/IPI) |
Phosphatidylinositol binding GO:0035091
Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Ubiquitin binding GO:0043130
Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Ubiquitin protein ligase activity GO:0061630
Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Ubiquitin protein ligase activity GO:0061630
Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Phospholipid binding GO:0005543
Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
|
1 | O14326 (/ISM) |
Ubiquitin protein ligase activity GO:0061630
Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
|
1 | O14326 (/ISM) |
There are 50 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein polyubiquitination GO:0000209
Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Protein polyubiquitination GO:0000209
Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Chromatin assembly or disassembly GO:0006333
The formation or destruction of chromatin structures.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Ubiquitin-dependent protein catabolic process GO:0006511
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Ubiquitin-dependent protein catabolic process GO:0006511
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Protein monoubiquitination GO:0006513
Addition of a single ubiquitin group to a protein.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Protein monoubiquitination GO:0006513
Addition of a single ubiquitin group to a protein.
|
3 | P39940 (/IGI) P39940 (/IGI) P39940 (/IGI) |
Protein monoubiquitination GO:0006513
Addition of a single ubiquitin group to a protein.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Regulation of nitrogen utilization GO:0006808
Any process that modulates the frequency, rate or extent of nitrogen utilization.
|
3 | P39940 (/IGI) P39940 (/IGI) P39940 (/IGI) |
Mitochondrion organization GO:0007005
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components.
|
3 | P39940 (/IGI) P39940 (/IGI) P39940 (/IGI) |
Mitochondrion organization GO:0007005
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Regulation of mRNA export from nucleus GO:0010793
Any process that modulates the frequency, rate or extent of the directed movement of mRNA from the nucleus to the cytoplasm.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Regulation of mRNA export from nucleus GO:0010793
Any process that modulates the frequency, rate or extent of the directed movement of mRNA from the nucleus to the cytoplasm.
|
3 | P39940 (/IPI) P39940 (/IPI) P39940 (/IPI) |
Regulation of dolichol biosynthetic process GO:0010794
Any process that modulates the frequency, rate or extent of dolichol biosynthesis. Dolichol biosynthesis consists of the chemical reactions and pathways resulting in the formation of dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units.
|
3 | P39940 (/IGI) P39940 (/IGI) P39940 (/IGI) |
Regulation of dolichol biosynthetic process GO:0010794
Any process that modulates the frequency, rate or extent of dolichol biosynthesis. Dolichol biosynthesis consists of the chemical reactions and pathways resulting in the formation of dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Regulation of ubiquinone biosynthetic process GO:0010795
Any process that modulates the frequency, rate or extent of ubiquinone biosynthesis. Ubiquinone biosynthesis consists of the chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme.
|
3 | P39940 (/IGI) P39940 (/IGI) P39940 (/IGI) |
Regulation of ubiquinone biosynthetic process GO:0010795
Any process that modulates the frequency, rate or extent of ubiquinone biosynthesis. Ubiquinone biosynthesis consists of the chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Regulation of multivesicular body size GO:0010796
Any process that modulates the volume of a multivesicular body, a type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Poly(A)+ mRNA export from nucleus GO:0016973
The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Regulation of phosphate metabolic process GO:0019220
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.
|
3 | P39940 (/IGI) P39940 (/IGI) P39940 (/IGI) |
Regulation of initiation of mating projection growth GO:0031384
Any process that modulates the frequency, rate, or extent of the start of mating projection formation by unicellular fungi.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Positive regulation of proteasomal ubiquitin-dependent protein catabolic process GO:0032436
Any process that activates or increases the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Regulation of ergosterol biosynthetic process GO:0032443
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ergosterol.
|
3 | P39940 (/IGI) P39940 (/IGI) P39940 (/IGI) |
Regulation of ergosterol biosynthetic process GO:0032443
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ergosterol.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Late endosome to vacuole transport via multivesicular body sorting pathway GO:0032511
The directed movement of substances from endosomes to vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the vacuole.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Late endosome to vacuole transport via multivesicular body sorting pathway GO:0032511
The directed movement of substances from endosomes to vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the vacuole.
|
3 | P39940 (/IPI) P39940 (/IPI) P39940 (/IPI) |
Regulation of protein localization GO:0032880
Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Regulation of protein localization GO:0032880
Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location.
|
3 | P39940 (/IPI) P39940 (/IPI) P39940 (/IPI) |
Regulation of actin cytoskeleton organization GO:0032956
Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
|
3 | P39940 (/IGI) P39940 (/IGI) P39940 (/IGI) |
Ribophagy GO:0034517
The selective autophagy process in which cells degrade mature ribosomes under conditions of starvation.
|
3 | P39940 (/IGI) P39940 (/IGI) P39940 (/IGI) |
Cellular response to UV GO:0034644
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
|
3 | P39940 (/IPI) P39940 (/IPI) P39940 (/IPI) |
Proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043161
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
|
3 | P39940 (/IPI) P39940 (/IPI) P39940 (/IPI) |
Ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway GO:0043162
The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the multivesicular body (MVB) sorting pathway; ubiquitin-tagged proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Positive regulation of fatty acid biosynthetic process GO:0045723
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Positive regulation of endocytosis GO:0045807
Any process that activates or increases the frequency, rate or extent of endocytosis.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Positive regulation of receptor-mediated endocytosis GO:0048260
Any process that activates or increases the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Protein autoubiquitination GO:0051865
The ubiquitination by a protein of one or more of its own amino acid residues, or residues on an identical protein. Ubiquitination occurs on the lysine residue by formation of an isopeptide crosslink.
|
3 | P39940 (/IGI) P39940 (/IGI) P39940 (/IGI) |
Ubiquitin-dependent endocytosis GO:0070086
Endocytosis of a protein that requires the substrate to be modified by ubiquitination. Several plasma membrane proteins, including cell surface permeases and some receptors, are targeted for internalization by endocytosis, and are thereafter delivered to the vacuole or lysosome, where they are degraded.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Mitochondria-associated ubiquitin-dependent protein catabolic process GO:0072671
The chemical reactions and pathways resulting in the breakdown of proteins transported from mitochondria and targeted to cytoplasmic proteasomes for degradation as a response to oxidative stress conditions.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Regulation of ribosomal large subunit export from nucleus GO:2000203
Any process that modulates the frequency, rate or extent of ribosomal large subunit export from nucleus.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Regulation of rRNA processing GO:2000232
Any process that modulates the frequency, rate or extent of rRNA processing.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Regulation of tRNA processing GO:2000235
Any process that modulates the frequency, rate or extent of tRNA processing.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Regulation of tRNA export from nucleus GO:2000238
Any process that modulates the frequency, rate or extent of tRNA export from nucleus.
|
3 | P39940 (/IMP) P39940 (/IMP) P39940 (/IMP) |
Ubiquitin-dependent protein catabolic process GO:0006511
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
|
1 | O14326 (/IC) |
Protein modification by small protein conjugation or removal GO:0070647
A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein.
|
1 | O14326 (/IC) |
There are 10 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Ubiquitin ligase complex GO:0000151
A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Ubiquitin ligase complex GO:0000151
A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.
|
3 | P39940 (/IPI) P39940 (/IPI) P39940 (/IPI) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
|
3 | P39940 (/HDA) P39940 (/HDA) P39940 (/HDA) |
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
3 | P39940 (/HDA) P39940 (/HDA) P39940 (/HDA) |
Cellular bud tip GO:0005934
The end of a cellular bud distal to the site of attachment to the mother cell.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Endosome membrane GO:0010008
The lipid bilayer surrounding an endosome.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |
Extrinsic component of cytoplasmic side of plasma membrane GO:0031234
The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to its cytoplasmic surface, but not integrated into the hydrophobic region.
|
3 | P39940 (/IDA) P39940 (/IDA) P39940 (/IDA) |