The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Cupin
".
FunFam 10: bifunctional arginine demethylase and lysyl-hydrox...
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 38 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Peptidyl-lysine 5-dioxygenase activity GO:0070815
Catalysis of the reaction: protein L-lysine + 2-oxoglutarate + O2 = protein 5-hydroxy-L-lysine + succinate + CO2.
|
17 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q623U2 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
(7 more) |
Single-stranded RNA binding GO:0003727
Interacting selectively and non-covalently with single-stranded RNA.
|
13 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6PFM0 (/ISS)
(3 more) |
Demethylase activity GO:0032451
Catalysis of the removal of a methyl group from a substrate.
|
13 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6PFM0 (/ISS)
(3 more) |
Histone demethylase activity GO:0032452
Catalysis of the removal of a methyl group from a histone.
|
13 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6PFM0 (/ISS)
(3 more) |
Histone demethylase activity (H3-R2 specific) GO:0033746
Catalysis of the removal of a methyl group from arginine at position 2 of the histone H3 protein.
|
13 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6PFM0 (/ISS)
(3 more) |
Histone demethylase activity (H4-R3 specific) GO:0033749
Catalysis of the removal of a methyl group from arginine at position 3 of the histone H4 protein.
|
13 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6PFM0 (/ISS)
(3 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
8 | Q58DS6 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q5ZMK5 (/ISS) Q6AYK2 (/ISS) Q9ERI5 (/ISS) |
Oxidative RNA demethylase activity GO:0035515
Catalysis of the removal of a methyl group from one or more nucleosides within a RNA molecule involving the oxidation (i.e. electron loss) of one or more atoms.
|
7 | Q58DS6 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q6AYK2 (/ISS) Q9ERI5 (/ISS) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
6 | Q6NYC1 (/IPI) Q6NYC1 (/IPI) Q6NYC1 (/IPI) Q6NYC1 (/IPI) Q9ERI5 (/IPI) Q9GYI4 (/IPI) |
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
6 | Q6NYC1 (/IDA) Q6NYC1 (/IDA) Q6NYC1 (/IDA) Q6NYC1 (/IDA) Q9ERI5 (/IDA) Q9GYI4 (/IDA) |
Showing 1 to 10 of 38 entries
There are 46 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine GO:0018395
The hydroxylation of peptidyl-lysine to peptidyl-5-hydroxy-L-lysine.
|
17 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q623U2 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
(7 more) |
Sprouting angiogenesis GO:0002040
The extension of new blood vessels from existing vessels into avascular tissues, this process includes the specialization of endothelial cells into leading tip and stalk cells, proliferation and migration of the endothelial cells and cell adhesion resulting in angiogenic sprout fusion or lumen formation.
|
16 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6NYC1 (/ISS)
(6 more) |
Protein demethylation GO:0006482
The removal of a methyl group, from a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom.
|
13 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6PFM0 (/ISS)
(3 more) |
Protein homooligomerization GO:0051260
The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
|
13 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6PFM0 (/ISS)
(3 more) |
Histone H4-R3 demethylation GO:0070079
The modification of histone H4 by the removal of a methyl group from arginine at position 3 of the histone.
|
13 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6PFM0 (/ISS)
(3 more) |
Regulation of mRNA splicing, via spliceosome GO:0048024
Any process that modulates the frequency, rate or extent of mRNA splicing via a spliceosomal mechanism.
|
12 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6PFM0 (/ISS)
(2 more) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
8 | Q58DS6 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q5ZMK5 (/ISS) Q6AYK2 (/ISS) Q9ERI5 (/ISS) |
Oxidative RNA demethylation GO:0035513
The removal of the methyl group from one or more nucleotides within an RNA molecule involving oxidation (i.e. electron loss) of one or more atoms.
|
7 | Q58DS6 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q6AYK2 (/ISS) Q9ERI5 (/ISS) |
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
7 | Q58DS6 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q5R6G2 (/ISS) Q6AYK2 (/ISS) Q9ERI5 (/ISS) |
Regulation of mRNA splicing, via spliceosome GO:0048024
Any process that modulates the frequency, rate or extent of mRNA splicing via a spliceosomal mechanism.
|
5 | Q6NYC1 (/IMP) Q6NYC1 (/IMP) Q6NYC1 (/IMP) Q6NYC1 (/IMP) Q9ERI5 (/IMP) |
Showing 1 to 10 of 46 entries
There are 18 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
15 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q623U2 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
(5 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
13 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6PFM0 (/ISS)
(3 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
13 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6PFM0 (/ISS)
(3 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
12 |
Q58DS6 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5R6G2 (/ISS)
Q5ZMK5 (/ISS)
Q6AYK2 (/ISS)
Q6GND3 (/ISS)
Q6GND3 (/ISS)
Q6PFM0 (/ISS)
(2 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
11 |
B2WTI4 (/IDA)
K7EJU9 (/IDA)
K7EJU9 (/IDA)
K7EJU9 (/IDA)
K7EJU9 (/IDA)
K7EJU9 (/IDA)
Q6NYC1 (/IDA)
Q6NYC1 (/IDA)
Q6NYC1 (/IDA)
Q6NYC1 (/IDA)
(1 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
7 | Q6NYC1 (/IDA) Q6NYC1 (/IDA) Q6NYC1 (/IDA) Q6NYC1 (/IDA) Q6Q4H1 (/IDA) Q9ERI5 (/IDA) Q9VD28 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | Q6NYC1 (/IMP) Q6NYC1 (/IMP) Q6NYC1 (/IMP) Q6NYC1 (/IMP) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
4 | Q6NYC1 (/TAS) Q6NYC1 (/TAS) Q6NYC1 (/TAS) Q6NYC1 (/TAS) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
4 | Q6NYC1 (/IDA) Q6NYC1 (/IDA) Q6NYC1 (/IDA) Q6NYC1 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
4 | Q6NYC1 (/IDA) Q6NYC1 (/IDA) Q6NYC1 (/IDA) Q6NYC1 (/IDA) |
Showing 1 to 10 of 18 entries