The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 39: RE36324p

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 4 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
12 A1ZAW9 (/ISS) Q49BK5 (/ISS) Q49BK6 (/ISS) Q49BK7 (/ISS) Q49BK8 (/ISS) Q49BK9 (/ISS) Q49BL1 (/ISS) Q49BL2 (/ISS) Q49BL4 (/ISS) Q49BL8 (/ISS)
(2 more)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
11 Q49BK5 (/IDA) Q49BK6 (/IDA) Q49BK7 (/IDA) Q49BK8 (/IDA) Q49BK9 (/IDA) Q49BL1 (/IDA) Q49BL2 (/IDA) Q49BL4 (/IDA) Q49BL8 (/IDA) Q49BM0 (/IDA)
(1 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
1 Q7JXA8 (/IPI)
PiRNA dual-strand cluster binding GO:1990472
Interacting selectively and non-covalently with dual-strand piRNA clusters, double-stranded DNA regions that give rise to PIWI-interacting RNAs (piRNAs) where piRNAs originate from both DNA strands via noncanonical transcription.
1 Q7JXA8 (/IDA)

There are 6 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Chromosome organization GO:0051276
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.
12 A1ZAW9 (/ISS) Q49BK5 (/ISS) Q49BK6 (/ISS) Q49BK7 (/ISS) Q49BK8 (/ISS) Q49BK9 (/ISS) Q49BL1 (/ISS) Q49BL2 (/ISS) Q49BL4 (/ISS) Q49BL8 (/ISS)
(2 more)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
11 Q49BK5 (/IMP) Q49BK6 (/IMP) Q49BK7 (/IMP) Q49BK8 (/IMP) Q49BK9 (/IMP) Q49BL1 (/IMP) Q49BL2 (/IMP) Q49BL4 (/IMP) Q49BL8 (/IMP) Q49BM0 (/IMP)
(1 more)
Chorion-containing eggshell pattern formation GO:0030381
The regionalization process that gives rise to the structural pattern of a chorion-containing eggshell such as those found in insects.
11 Q49BK5 (/IMP) Q49BK6 (/IMP) Q49BK7 (/IMP) Q49BK8 (/IMP) Q49BK9 (/IMP) Q49BL1 (/IMP) Q49BL2 (/IMP) Q49BL4 (/IMP) Q49BL8 (/IMP) Q49BM0 (/IMP)
(1 more)
PiRNA metabolic process GO:0034587
The chemical reactions and pathways involving piRNAs, Piwi-associated RNAs, a class of 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism.
11 Q49BK5 (/IDA) Q49BK6 (/IDA) Q49BK7 (/IDA) Q49BK8 (/IDA) Q49BK9 (/IDA) Q49BL1 (/IDA) Q49BL2 (/IDA) Q49BL4 (/IDA) Q49BL8 (/IDA) Q49BM0 (/IDA)
(1 more)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
11 Q49BK5 (/IMP) Q49BK6 (/IMP) Q49BK7 (/IMP) Q49BK8 (/IMP) Q49BK9 (/IMP) Q49BL1 (/IMP) Q49BL2 (/IMP) Q49BL4 (/IMP) Q49BL8 (/IMP) Q49BM0 (/IMP)
(1 more)
PiRNA biosynthetic process GO:1990511
The chemical reactions and pathways resulting in the formation of piRNAs, Piwi-associated RNAs, a class of 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism.
1 Q7JXA8 (/IMP)

There are 3 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Chromatin GO:0000785
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
12 A1ZAW9 (/ISS) Q49BK5 (/ISS) Q49BK6 (/ISS) Q49BK7 (/ISS) Q49BK8 (/ISS) Q49BK9 (/ISS) Q49BL1 (/ISS) Q49BL2 (/ISS) Q49BL4 (/ISS) Q49BL8 (/ISS)
(2 more)
Heterochromatin GO:0000792
A compact and highly condensed form of chromatin.
11 Q49BK5 (/IDA) Q49BK6 (/IDA) Q49BK7 (/IDA) Q49BK8 (/IDA) Q49BK9 (/IDA) Q49BL1 (/IDA) Q49BL2 (/IDA) Q49BL4 (/IDA) Q49BL8 (/IDA) Q49BM0 (/IDA)
(1 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
11 Q49BK5 (/IDA) Q49BK6 (/IDA) Q49BK7 (/IDA) Q49BK8 (/IDA) Q49BK9 (/IDA) Q49BL1 (/IDA) Q49BL2 (/IDA) Q49BL4 (/IDA) Q49BL8 (/IDA) Q49BM0 (/IDA)
(1 more)
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