CATH Superfamily 2.40.50.1000
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 2: 40S ribosomal protein S11
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 3 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
59 |
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
(49 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
59 |
P62280 (/IPI)
P62280 (/IPI)
P62280 (/IPI)
P62280 (/IPI)
P62280 (/IPI)
P62280 (/IPI)
P62280 (/IPI)
P62280 (/IPI)
P62280 (/IPI)
P62280 (/IPI)
(49 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
5 | Q0E9B6 (/TAS) Q0E9B6 (/TAS) Q0E9B6 (/TAS) Q0E9B6 (/TAS) Q0E9B6 (/TAS) |
There are 8 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
59 |
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
(49 more) |
Osteoblast differentiation GO:0001649
The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.
|
59 |
P62282 (/HDA)
P62282 (/HDA)
P62282 (/HDA)
P62282 (/HDA)
P62282 (/HDA)
P62282 (/HDA)
P62282 (/HDA)
P62282 (/HDA)
P62282 (/HDA)
P62282 (/HDA)
(49 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
59 |
P62280 (/IC)
P62280 (/IC)
P62280 (/IC)
P62280 (/IC)
P62280 (/IC)
P62280 (/IC)
P62280 (/IC)
P62280 (/IC)
P62280 (/IC)
P62280 (/IC)
(49 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
59 |
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
(49 more) |
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
|
59 |
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
(49 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
59 |
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
(49 more) |
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
|
59 |
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
(49 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
5 | Q0E9B6 (/TAS) Q0E9B6 (/TAS) Q0E9B6 (/TAS) Q0E9B6 (/TAS) Q0E9B6 (/TAS) |
There are 15 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
118 |
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
(108 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
118 |
P62280 (/IDA)
P62280 (/IDA)
P62280 (/IDA)
P62280 (/IDA)
P62280 (/IDA)
P62280 (/IDA)
P62280 (/IDA)
P62280 (/IDA)
P62280 (/IDA)
P62280 (/IDA)
(108 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
64 |
A0EZU4 (/ISS)
A2Q0S6 (/ISS)
Q3T0V4 (/ISS)
Q3T0V4 (/ISS)
Q3T0V4 (/ISS)
Q3T0V4 (/ISS)
Q3T0V4 (/ISS)
Q3T0V4 (/ISS)
Q3T0V4 (/ISS)
Q3T0V4 (/ISS)
(54 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
59 |
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
(49 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
59 |
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
(49 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
59 |
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
(49 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
59 |
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
P62280 (/TAS)
(49 more) |
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
|
59 |
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
P62280 (/NAS)
(49 more) |
Focal adhesion GO:0005925
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
|
59 |
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
(49 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
59 |
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
(49 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
59 |
P62281 (/ISO)
P62281 (/ISO)
P62281 (/ISO)
P62281 (/ISO)
P62281 (/ISO)
P62281 (/ISO)
P62281 (/ISO)
P62281 (/ISO)
P62281 (/ISO)
P62281 (/ISO)
(49 more) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
59 |
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
P62280 (/HDA)
(49 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
5 | Q0E9B6 (/IDA) Q0E9B6 (/IDA) Q0E9B6 (/IDA) Q0E9B6 (/IDA) Q0E9B6 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
5 | Q0E9B6 (/IDA) Q0E9B6 (/IDA) Q0E9B6 (/IDA) Q0E9B6 (/IDA) Q0E9B6 (/IDA) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
5 | Q0E9B6 (/TAS) Q0E9B6 (/TAS) Q0E9B6 (/TAS) Q0E9B6 (/TAS) Q0E9B6 (/TAS) |