The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"DNA-binding pseudobarrel domain
".
FunFam 2: B3 domain-containing protein
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 6 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
13 |
O82595 (/ISS)
O82595 (/ISS)
O82799 (/ISS)
Q8GYJ2 (/ISS)
Q8GYJ2 (/ISS)
Q8RYD3 (/ISS)
Q9FNI3 (/ISS)
Q9M268 (/ISS)
Q9M268 (/ISS)
Q9M268 (/ISS)
(3 more) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
2 | O82595 (/IPI) O82595 (/IPI) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
2 | O82799 (/IDA) Q8RYD3 (/IDA) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
1 | Q8RYD3 (/IPI) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
1 | Q8RYD3 (/IPI) |
|
Transcription regulatory region DNA binding GO:0044212
Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
|
1 | Q8RYD3 (/IPI) |
There are 12 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Flower development GO:0009908
The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.
|
9 | O82595 (/IMP) O82595 (/IMP) O82799 (/IMP) Q9M268 (/IMP) Q9M268 (/IMP) Q9M268 (/IMP) Q9MAN1 (/IMP) Q9MAN1 (/IMP) Q9MAN1 (/IMP) |
|
Leaf development GO:0048366
The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
|
9 | O82595 (/IMP) O82595 (/IMP) O82799 (/IMP) Q9M268 (/IMP) Q9M268 (/IMP) Q9M268 (/IMP) Q9MAN1 (/IMP) Q9MAN1 (/IMP) Q9MAN1 (/IMP) |
|
Regulation of leaf morphogenesis GO:1901371
Any process that modulates the frequency, rate or extent of leaf morphogenesis.
|
9 | O82595 (/IGI) O82595 (/IGI) O82799 (/IGI) Q9M268 (/IGI) Q9M268 (/IGI) Q9M268 (/IGI) Q9MAN1 (/IGI) Q9MAN1 (/IGI) Q9MAN1 (/IGI) |
|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
4 | Q9FNI3 (/TAS) Q9MAN1 (/TAS) Q9MAN1 (/TAS) Q9MAN1 (/TAS) |
|
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
2 | Q8GYJ2 (/IDA) Q8GYJ2 (/IDA) |
|
Response to karrikin GO:0080167
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants).
|
2 | Q8GYJ2 (/IEP) Q8GYJ2 (/IEP) |
|
Meristem maintenance GO:0010073
Any process involved in maintaining the identity, size and shape of a meristem.
|
1 | Q9FNI3 (/IMP) |
|
Leaf shaping GO:0010358
The developmental process that pertains to the organization of a leaf in three-dimensional space once the structure has initially formed.
|
1 | Q9FNI3 (/IGI) |
|
Glucosinolate metabolic process GO:0019760
The chemical reactions and pathways involving glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. They are metabolized to a variety of toxic products which are most likely the cause of hepatocytic necrosis in animals and humans.
|
1 | Q8RYD3 (/IMP) |
|
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
1 | Q9FNI3 (/IMP) |
|
Leaf development GO:0048366
The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
|
1 | Q9FNI3 (/IGI) |
|
Regulation of seed growth GO:0080113
Any process that modulates the frequency, rate or extent of growth of the seed of an plant.
|
1 | Q8RYD3 (/IMP) |
There are 1 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q8RYD3 (/IDA) |