CATH Superfamily 2.40.30.230
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: Regulator of nonsense transcripts 1
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 15 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
10 | Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q9EPU0 (/IPI) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
9 | Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
9 | Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) |
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
Helicase activity GO:0004386
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
|
9 | Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) |
Telomeric DNA binding GO:0042162
Interacting selectively and non-covalently with a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
1 | Q9EPU0 (/ISO) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
1 | Q9EPU0 (/ISS) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
1 | Q9EPU0 (/ISO) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
1 | Q9EPU0 (/ISS) |
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
|
1 | Q9EPU0 (/ISO) |
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
|
1 | Q9EPU0 (/ISS) |
Telomeric DNA binding GO:0042162
Interacting selectively and non-covalently with a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end.
|
1 | Q9EPU0 (/ISO) |
There are 50 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
13 |
F1RCY6 (/IMP)
Q7ZVZ4 (/IMP)
Q92900 (/IMP)
Q92900 (/IMP)
Q92900 (/IMP)
Q92900 (/IMP)
Q92900 (/IMP)
Q92900 (/IMP)
Q92900 (/IMP)
Q92900 (/IMP)
(3 more) |
Nuclear-transcribed mRNA catabolic process GO:0000956
The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
|
10 | F1RCY6 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) |
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
9 | Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) |
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
9 | Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) |
Nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay GO:0000294
A minor degradation pathway nuclear-transcribed mRNAs that begins with an endonucleolytic cleavage to generate unprotected ends.
|
9 | Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) |
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
|
9 | Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) |
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
|
9 | Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) |
Regulation of translational termination GO:0006449
Any process that modulates the frequency, rate or extent of translational termination.
|
9 | Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) |
Regulation of translational termination GO:0006449
Any process that modulates the frequency, rate or extent of translational termination.
|
9 | Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) |
Telomere maintenance via semi-conservative replication GO:0032201
The process in which telomeric DNA is synthesized semi-conservatively by the conventional replication machinery and telomeric accessory factors as part of cell cycle DNA replication.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
Regulation of telomere maintenance GO:0032204
Any process that modulates the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA.
|
9 | Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) |
Cell cycle phase transition GO:0044770
The cell cycle process by which a cell commits to entering the next cell cycle phase.
|
9 | Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) |
Positive regulation of mRNA catabolic process GO:0061014
Any process that increases the rate, frequency, or extent of a mRNA catabolic process, the chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
Positive regulation of mRNA catabolic process GO:0061014
Any process that increases the rate, frequency, or extent of a mRNA catabolic process, the chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
|
9 | Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) |
3'-UTR-mediated mRNA destabilization GO:0061158
An mRNA destabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
3'-UTR-mediated mRNA destabilization GO:0061158
An mRNA destabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA.
|
9 | Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) |
Histone mRNA catabolic process GO:0071044
The chemical reactions and pathways resulting in the breakdown of histone messenger RNA (mRNA).
|
9 | Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) |
Cellular response to lipopolysaccharide GO:0071222
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
Cellular response to interleukin-1 GO:0071347
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-1 stimulus.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
Nuclear-transcribed mRNA catabolic process GO:0000956
The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
|
2 | F1RCY6 (/IGI) Q7ZVZ4 (/IGI) |
Chordate embryonic development GO:0043009
The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching.
|
2 | F1RCY6 (/IMP) Q7ZVZ4 (/IMP) |
Cellular response to hypoxia GO:0071456
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
|
2 | Q9VYS3 (/IMP) Q9VYS3 (/IMP) |
Positive regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:2000624
Any process that activates or increases the frequency, rate or extent of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay.
|
2 | Q9VYS3 (/IMP) Q9VYS3 (/IMP) |
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
1 | Q9EPU0 (/ISO) |
Nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay GO:0000294
A minor degradation pathway nuclear-transcribed mRNAs that begins with an endonucleolytic cleavage to generate unprotected ends.
|
1 | Q9EPU0 (/ISO) |
Nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay GO:0000294
A minor degradation pathway nuclear-transcribed mRNAs that begins with an endonucleolytic cleavage to generate unprotected ends.
|
1 | Q9EPU0 (/ISS) |
Nuclear-transcribed mRNA catabolic process GO:0000956
The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
|
1 | Q9EPU0 (/ISO) |
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
|
1 | Q9EPU0 (/ISO) |
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
|
1 | Q9EPU0 (/ISS) |
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
|
1 | Q9EPU0 (/ISO) |
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
|
1 | Q9EPU0 (/ISS) |
Regulation of translational termination GO:0006449
Any process that modulates the frequency, rate or extent of translational termination.
|
1 | Q9EPU0 (/ISO) |
Regulation of translational termination GO:0006449
Any process that modulates the frequency, rate or extent of translational termination.
|
1 | Q9EPU0 (/ISS) |
Dosage compensation by inactivation of X chromosome GO:0009048
Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex.
|
1 | Q9EPU0 (/IMP) |
Telomere maintenance via semi-conservative replication GO:0032201
The process in which telomeric DNA is synthesized semi-conservatively by the conventional replication machinery and telomeric accessory factors as part of cell cycle DNA replication.
|
1 | Q9EPU0 (/ISO) |
Regulation of telomere maintenance GO:0032204
Any process that modulates the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA.
|
1 | Q9EPU0 (/ISO) |
Cell cycle phase transition GO:0044770
The cell cycle process by which a cell commits to entering the next cell cycle phase.
|
1 | Q9EPU0 (/ISO) |
Cell cycle phase transition GO:0044770
The cell cycle process by which a cell commits to entering the next cell cycle phase.
|
1 | Q9EPU0 (/ISS) |
Positive regulation of mRNA catabolic process GO:0061014
Any process that increases the rate, frequency, or extent of a mRNA catabolic process, the chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
|
1 | Q9EPU0 (/ISO) |
Positive regulation of mRNA catabolic process GO:0061014
Any process that increases the rate, frequency, or extent of a mRNA catabolic process, the chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
|
1 | Q9EPU0 (/ISS) |
3'-UTR-mediated mRNA destabilization GO:0061158
An mRNA destabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA.
|
1 | Q9EPU0 (/ISO) |
3'-UTR-mediated mRNA destabilization GO:0061158
An mRNA destabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA.
|
1 | Q9EPU0 (/ISS) |
Histone mRNA catabolic process GO:0071044
The chemical reactions and pathways resulting in the breakdown of histone messenger RNA (mRNA).
|
1 | Q9EPU0 (/ISO) |
Histone mRNA catabolic process GO:0071044
The chemical reactions and pathways resulting in the breakdown of histone messenger RNA (mRNA).
|
1 | Q9EPU0 (/ISS) |
Cellular response to lipopolysaccharide GO:0071222
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
|
1 | Q9EPU0 (/ISO) |
Cellular response to lipopolysaccharide GO:0071222
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
|
1 | Q9EPU0 (/ISS) |
Cellular response to interleukin-1 GO:0071347
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-1 stimulus.
|
1 | Q9EPU0 (/ISO) |
Cellular response to interleukin-1 GO:0071347
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-1 stimulus.
|
1 | Q9EPU0 (/ISS) |
There are 17 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
24 |
A0A024R7L5 (/IDA)
A0A024R7L5 (/IDA)
A0A024R7L5 (/IDA)
A0A024R7L5 (/IDA)
A0A024R7L5 (/IDA)
A0A024R7L5 (/IDA)
A0A024R7L8 (/IDA)
A0A024R7L8 (/IDA)
A0A024R7L8 (/IDA)
A0A024R7L8 (/IDA)
(14 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
10 | Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q9EPU0 (/TAS) |
Nuclear chromosome, telomeric region GO:0000784
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
Chromatin GO:0000785
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
9 | Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) |
Exon-exon junction complex GO:0035145
A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
Supraspliceosomal complex GO:0044530
Multicomponent complex of RNA and proteins that is composed of four active spliceosomes, termed native spliceosomes, connected to each other by the pre-mRNA. The supraspliceosome is the nuclear machine where the pre-mRNA processing takes place, like the 5'-end capping, 3'-end cleavage, splicing and editing.
|
9 | Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) |
Neuronal ribonucleoprotein granule GO:0071598
A ribonucleoprotein complex that is found in the cytoplasm of axons and dendrites, and transports translationally silenced mRNAs to dendritic synapses, where they are released and translated in response to specific exogenous stimuli.
|
2 | Q9VYS3 (/IDA) Q9VYS3 (/IDA) |
Messenger ribonucleoprotein complex GO:1990124
A ribonucleoprotein complex containing both protein and messenger RNA (mRNA) molecules.
|
2 | Q9VYS3 (/IDA) Q9VYS3 (/IDA) |
Nuclear chromosome, telomeric region GO:0000784
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
|
1 | Q9EPU0 (/ISO) |
Chromatin GO:0000785
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
|
1 | Q9EPU0 (/ISO) |
Chromatin GO:0000785
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
|
1 | Q9EPU0 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q9EPU0 (/ISO) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
1 | Q9EPU0 (/ISO) |
Exon-exon junction complex GO:0035145
A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
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1 | Q9EPU0 (/ISO) |
Supraspliceosomal complex GO:0044530
Multicomponent complex of RNA and proteins that is composed of four active spliceosomes, termed native spliceosomes, connected to each other by the pre-mRNA. The supraspliceosome is the nuclear machine where the pre-mRNA processing takes place, like the 5'-end capping, 3'-end cleavage, splicing and editing.
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1 | Q9EPU0 (/ISO) |