CATH Superfamily 2.30.30.140
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 28: polycomb protein SCMH1 isoform X1
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 6 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
17 |
B1AVB1 (/IPI)
B1AVB2 (/IPI)
B1AVB3 (/IPI)
B1AVB4 (/IPI)
B1AVB5 (/IPI)
E9Q796 (/IPI)
I6L9E4 (/IPI)
Q8BYC8 (/IPI)
Q8K214 (/IPI)
Q96GD3 (/IPI)
(7 more) |
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
|
2 | Q9VHA0 (/NAS) Q9VHA0 (/NAS) |
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
2 | Q9VHA0 (/IPI) Q9VHA0 (/IPI) |
PRC1 complex binding GO:0140259
Interacting selectively and non-covalently with a PRC1 complex.
|
2 | Q9VHA0 (/IDA) Q9VHA0 (/IDA) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
1 | Q9UQR0 (/TAS) |
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
1 | Q9UQR0 (/TAS) |
There are 22 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Apoptotic process GO:0006915
A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
|
9 | B1AVB1 (/IMP) B1AVB2 (/IMP) B1AVB3 (/IMP) B1AVB4 (/IMP) B1AVB5 (/IMP) E9Q796 (/IMP) I6L9E4 (/IMP) Q8BYC8 (/IMP) Q99MW4 (/IMP) |
Cellular protein localization GO:0034613
Any process in which a protein is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell.
|
9 | B1AVB1 (/IMP) B1AVB2 (/IMP) B1AVB3 (/IMP) B1AVB4 (/IMP) B1AVB5 (/IMP) E9Q796 (/IMP) I6L9E4 (/IMP) Q8BYC8 (/IMP) Q99MW4 (/IMP) |
Histone H2A-K119 monoubiquitination GO:0036353
The modification of histone H2A by addition of a single ubiquitin group to lysine-119 (H2A- K119) in metazoans, and at the equivalent residue in other organisms.
|
9 | B1AVB1 (/IMP) B1AVB2 (/IMP) B1AVB3 (/IMP) B1AVB4 (/IMP) B1AVB5 (/IMP) E9Q796 (/IMP) I6L9E4 (/IMP) Q8BYC8 (/IMP) Q99MW4 (/IMP) |
Gene silencing GO:0016458
Any process carried out at the cellular level that results in either long-term transcriptional repression via action on chromatin structure or RNA mediated, post-transcriptional repression of gene expression.
|
5 | Q8K214 (/ISS) Q96GD3 (/ISS) Q96GD3 (/ISS) Q96GD3 (/ISS) Q96GD3 (/ISS) |
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
5 | Q8K214 (/NAS) Q96GD3 (/NAS) Q96GD3 (/NAS) Q96GD3 (/NAS) Q96GD3 (/NAS) |
Axonogenesis GO:0007409
De novo generation of a long process of a neuron, including the terminal branched region. Refers to the morphogenesis or creation of shape or form of the developing axon, which carries efferent (outgoing) action potentials from the cell body towards target cells.
|
2 | Q9VHA0 (/IMP) Q9VHA0 (/IMP) |
Ventral cord development GO:0007419
The process whose specific outcome is the progression of the ventral cord over time, from its formation to the mature structure. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms.
|
2 | Q9VHA0 (/HMP) Q9VHA0 (/HMP) |
Gene silencing GO:0016458
Any process carried out at the cellular level that results in either long-term transcriptional repression via action on chromatin structure or RNA mediated, post-transcriptional repression of gene expression.
|
2 | Q9VHA0 (/IGI) Q9VHA0 (/IGI) |
Gene silencing GO:0016458
Any process carried out at the cellular level that results in either long-term transcriptional repression via action on chromatin structure or RNA mediated, post-transcriptional repression of gene expression.
|
2 | Q9VHA0 (/IMP) Q9VHA0 (/IMP) |
Neurogenesis GO:0022008
Generation of cells within the nervous system.
|
2 | Q9VHA0 (/IMP) Q9VHA0 (/IMP) |
Germarium-derived female germ-line cyst encapsulation GO:0030708
Formation of a single follicular epithelium around the germ-line derived cells of a cyst formed in the germarium. An example of this process is found in Drosophila melanogaster.
|
2 | Q9VHA0 (/IMP) Q9VHA0 (/IMP) |
Ovarian follicle cell stalk formation GO:0030713
Development of ovarian follicle cells to create the interfollicular stalks that connect the egg chambers of progressive developmental stages. An example of this process is found in Drosophila melanogaster.
|
2 | Q9VHA0 (/IMP) Q9VHA0 (/IMP) |
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
2 | Q9VHA0 (/IC) Q9VHA0 (/IC) |
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
2 | Q9VHA0 (/TAS) Q9VHA0 (/TAS) |
Negative regulation of growth GO:0045926
Any process that stops, prevents or reduces the rate or extent of growth, the increase in size or mass of all or part of an organism.
|
2 | Q9VHA0 (/IMP) Q9VHA0 (/IMP) |
Compound eye development GO:0048749
The process whose specific outcome is the progression of the compound eye over time, from its formation to the mature structure. The compound eye is an organ of sight that contains multiple repeating units, often arranged hexagonally. Each unit has its own lens and photoreceptor cell(s) and can generate either a single pixelated image or multiple images, per eye.
|
2 | Q9VHA0 (/IMP) Q9VHA0 (/IMP) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
1 | Q8K214 (/IMP) |
Spermatogenesis GO:0007283
The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
|
1 | Q8K214 (/IGI) |
Spermatogenesis GO:0007283
The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
|
1 | Q8K214 (/IMP) |
Anatomical structure morphogenesis GO:0009653
The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
|
1 | Q9UQR0 (/TAS) |
Anterior/posterior pattern specification GO:0009952
The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
|
1 | Q8K214 (/IMP) |
Vulval development GO:0040025
The process whose specific outcome is the progression of the egg-laying organ of female and hermaphrodite nematodes over time, from its formation to the mature structure. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed vulva in the adult.
|
1 | B2D6M2 (/IGI) |
There are 10 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
14 |
B1AVB1 (/IDA)
B1AVB2 (/IDA)
B1AVB3 (/IDA)
B1AVB4 (/IDA)
B1AVB5 (/IDA)
B2D6M2 (/IDA)
E9Q796 (/IDA)
I6L9E4 (/IDA)
Q8BYC8 (/IDA)
Q8K214 (/IDA)
(4 more) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
9 | B1AVB1 (/IDA) B1AVB2 (/IDA) B1AVB3 (/IDA) B1AVB4 (/IDA) B1AVB5 (/IDA) E9Q796 (/IDA) I6L9E4 (/IDA) Q8BYC8 (/IDA) Q99MW4 (/IDA) |
XY body GO:0001741
A structure found in a male mammalian spermatocyte containing an unpaired X chromosome that has become densely heterochromatic, silenced and localized at the nuclear periphery.
|
9 | B1AVB1 (/IDA) B1AVB2 (/IDA) B1AVB3 (/IDA) B1AVB4 (/IDA) B1AVB5 (/IDA) E9Q796 (/IDA) I6L9E4 (/IDA) Q8BYC8 (/IDA) Q99MW4 (/IDA) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
4 | Q96GD3 (/TAS) Q96GD3 (/TAS) Q96GD3 (/TAS) Q96GD3 (/TAS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | Q9VHA0 (/IC) Q9VHA0 (/IC) |
Polytene chromosome GO:0005700
A type of chromosome in a polyploid cell, formed when multiple copies of homologous chromosomes are aligned side by side to give a giant chromosome in which distinct chromosome bands are readily visible.
|
2 | Q9VHA0 (/IDA) Q9VHA0 (/IDA) |
PRC1 complex GO:0035102
A multiprotein complex that mediates monoubiquitination of lysine residues of histone H2A (lysine-118 in Drosophila or lysine-119 in mammals). The complex is required for stable long-term maintenance of transcriptionally repressed states and is involved in chromatin remodeling.
|
2 | Q9VHA0 (/TAS) Q9VHA0 (/TAS) |
Chromatin GO:0000785
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
|
1 | B2D6M2 (/IDA) |
Chromocenter GO:0010369
A region in which centric, heterochromatic portions of one or more chromosomes form a compact structure.
|
1 | Q8K214 (/IDA) |
PcG protein complex GO:0031519
A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure.
|
1 | Q9UQR0 (/IDA) |