The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 3: FACT complex subunit SPT16

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
13 Q9W603 (/IPI) Q9W603 (/IPI) Q9Y5B9 (/IPI) Q9Y5B9 (/IPI) Q9Y5B9 (/IPI) Q9Y5B9 (/IPI) Q9Y5B9 (/IPI) Q9Y5B9 (/IPI) Q9Y5B9 (/IPI) Q9Y5B9 (/IPI)
(3 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
11 Q9Y5B9 (/HDA) Q9Y5B9 (/HDA) Q9Y5B9 (/HDA) Q9Y5B9 (/HDA) Q9Y5B9 (/HDA) Q9Y5B9 (/HDA) Q9Y5B9 (/HDA) Q9Y5B9 (/HDA) Q9Y5B9 (/HDA) Q9Y5B9 (/HDA)
(1 more)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
1 Q8IRG6 (/IDA)
Nucleosome binding GO:0031491
Interacting selectively and non-covalently with a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
1 Q8IRG6 (/IDA)
Protein heterodimerization activity GO:0046982
Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
1 Q8IRG6 (/IPI)
Protein N-terminus binding GO:0047485
Interacting selectively and non-covalently with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
1 Q8IRG6 (/IMP)

There are 10 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleosome disassembly GO:0006337
The controlled breakdown of nucleosomes, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
11 Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS)
(1 more)
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
11 Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS)
(1 more)
Transcription elongation from RNA polymerase II promoter GO:0006368
The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
11 Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS)
(1 more)
Positive regulation of DNA-templated transcription, elongation GO:0032786
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
11 Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS)
(1 more)
Regulation of signal transduction by p53 class mediator GO:1901796
Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator.
11 Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS)
(1 more)
Regulation of chromatin assembly or disassembly GO:0001672
Any process that modulates the frequency, rate or extent of chromatin assembly or disassembly.
1 Q8IRG6 (/IMP)
Positive regulation of transcription elongation from RNA polymerase II promoter GO:0032968
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
1 Q8IRG6 (/IMP)
Regulation of embryonic development GO:0045995
Any process that modulates the frequency, rate or extent of embryonic development.
1 Q9N5R9 (/IMP)
Positive regulation of chromosome segregation GO:0051984
Any process that activates or increases the frequency, rate or extent of chromosome segregation, the process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets.
1 Q9N5R9 (/IMP)
Pharynx development GO:0060465
The biological process whose specific outcome is the progression of a pharynx from an initial condition to its mature state. The pharynx is the part of the digestive system immediately posterior to the mouth.
1 Q9N5R9 (/IMP)

There are 8 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
13 Q8IRG6 (/IDA) Q9N5R9 (/IDA) Q9Y5B9 (/IDA) Q9Y5B9 (/IDA) Q9Y5B9 (/IDA) Q9Y5B9 (/IDA) Q9Y5B9 (/IDA) Q9Y5B9 (/IDA) Q9Y5B9 (/IDA) Q9Y5B9 (/IDA)
(3 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
11 Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS) Q9Y5B9 (/TAS)
(1 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q920B9 (/ISO)
Polytene chromosome puff GO:0005703
A swelling at a site along the length of a polytene chromosome, thought to be the site of active transcription.
1 Q8IRG6 (/IDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
1 Q8IRG6 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q8IRG6 (/IDA)
FACT complex GO:0035101
An abundant nuclear complex, which was originally identified in mammalian systems as a factor required for transcription elongation on chromatin templates. The FACT complex has been shown to destablilize the interaction between the H2A/H2B dimer and the H3/H4 tetramer of the nucleosome, thus reorganizing the structure of the nucleosome. In this way, the FACT complex may play a role in DNA replication and other processes that traverse the chromatin, as well as in transcription elongation. FACT is composed of two proteins that are evolutionarily conserved in all eukaryotes and homologous to mammalian Spt16 and SSRP1. In metazoans, the SSRP1 homolog contains an HMG domain; however in fungi and protists, it does not. For example, in S. cerevisiae the Pob3 protein is homologous to SSRP1, but lacks the HMG chromatin binding domain. Instead, the yFACT complex of Spt16p and Pob3p, binds to nucleosomes where multiple copies of the HMG-domain containing protein Nhp6p have already bound, but Nhp6p does not form a stable complex with the Spt16p/Pob3p heterodimer.
1 Q8IRG6 (/IDA)
FACT complex GO:0035101
An abundant nuclear complex, which was originally identified in mammalian systems as a factor required for transcription elongation on chromatin templates. The FACT complex has been shown to destablilize the interaction between the H2A/H2B dimer and the H3/H4 tetramer of the nucleosome, thus reorganizing the structure of the nucleosome. In this way, the FACT complex may play a role in DNA replication and other processes that traverse the chromatin, as well as in transcription elongation. FACT is composed of two proteins that are evolutionarily conserved in all eukaryotes and homologous to mammalian Spt16 and SSRP1. In metazoans, the SSRP1 homolog contains an HMG domain; however in fungi and protists, it does not. For example, in S. cerevisiae the Pob3 protein is homologous to SSRP1, but lacks the HMG chromatin binding domain. Instead, the yFACT complex of Spt16p and Pob3p, binds to nucleosomes where multiple copies of the HMG-domain containing protein Nhp6p have already bound, but Nhp6p does not form a stable complex with the Spt16p/Pob3p heterodimer.
1 Q8IRG6 (/TAS)
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