The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: Casein kinase II subunit beta

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 9 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein kinase regulator activity GO:0019887
Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein.
26 P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P43639 (/IMP)
(16 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
20 O96863 (/IPI) P28548 (/IPI) P38930 (/IPI) P38930 (/IPI) P38930 (/IPI) P38930 (/IPI) P38930 (/IPI) P38930 (/IPI) P38930 (/IPI) P38930 (/IPI)
(10 more)
Protein serine/threonine kinase inhibitor activity GO:0030291
Stops, prevents or reduces the activity of a protein serine/threonine kinase.
18 P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P43639 (/IDA)
(8 more)
Protein serine/threonine kinase activity GO:0004674
Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
14 Q8IIW5 (/IDA) Q8IIW5 (/IDA) Q8IIW5 (/IDA) Q8IIW5 (/IDA) Q8IIW5 (/IDA) Q8IIW5 (/IDA) Q8IIW5 (/IDA) Q8IIW5 (/IDA) Q8IIW5 (/IDA) Q8IIW5 (/IDA)
(4 more)
Protein kinase regulator activity GO:0019887
Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein.
12 A0A1D8PNI6 (/IDA) P43639 (/IDA) P43639 (/IDA) P43639 (/IDA) P43639 (/IDA) P43639 (/IDA) P43639 (/IDA) P43639 (/IDA) P43639 (/IDA) P43639 (/IDA)
(2 more)
Protein kinase regulator activity GO:0019887
Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein.
2 A0A1D8PNI6 (/ISS) Q5ACW5 (/ISS)
Protein kinase regulator activity GO:0019887
Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein.
1 B8K3A5 (/ISO)
Protein serine/threonine kinase inhibitor activity GO:0030291
Stops, prevents or reduces the activity of a protein serine/threonine kinase.
1 O94281 (/ISO)
Protein serine/threonine kinase activator activity GO:0043539
Binds to and increases the activity of a protein serine/threonine kinase.
1 P40232 (/IDA)

There are 17 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein phosphorylation GO:0006468
The process of introducing a phosphate group on to a protein.
20 A0A1D8PNI6 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA)
(10 more)
Regulation of transcription by RNA polymerase I GO:0006356
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase I.
18 P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P43639 (/IDA)
(8 more)
Regulation of transcription by RNA polymerase III GO:0006359
Any process that modulates the frequency, rate or extent of transcription mediated by RNA ploymerase III.
18 P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P43639 (/IDA)
(8 more)
Protein phosphorylation GO:0006468
The process of introducing a phosphate group on to a protein.
18 P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P38930 (/IMP) P43639 (/IMP)
(8 more)
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
18 P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P43639 (/IDA)
(8 more)
Peptidyl-serine phosphorylation GO:0018105
The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine.
18 P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P43639 (/IDA)
(8 more)
Peptidyl-threonine phosphorylation GO:0018107
The phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine.
18 P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P43639 (/IDA)
(8 more)
RRNA methylation GO:0031167
The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule.
18 P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P43639 (/TAS)
(8 more)
Regulation of protein serine/threonine phosphatase activity GO:0080163
Any process that modulates the frequency, rate or extent of protein serine/threonine phosphatase activity: catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate.
8 Q7KV12 (/IMP) Q7KV13 (/IMP) Q7KV14 (/IMP) Q7KV15 (/IMP) Q7KV18 (/IMP) Q7KV19 (/IMP) Q7KV22 (/IMP) Q7KV23 (/IMP)
Signal transduction GO:0007165
The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
2 O94281 (/IC) P40232 (/IC)
Cellular response to drug GO:0035690
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
2 A0A1D8PNI6 (/IMP) Q5ACW5 (/IMP)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
1 P40232 (/IDA)
Regulation of transcription by RNA polymerase I GO:0006356
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase I.
1 O94281 (/ISO)
Regulation of transcription by RNA polymerase III GO:0006359
Any process that modulates the frequency, rate or extent of transcription mediated by RNA ploymerase III.
1 O94281 (/ISO)
Protein phosphorylation GO:0006468
The process of introducing a phosphate group on to a protein.
1 Q24536 (/ISS)
Response to hermaphrodite contact GO:0034606
The response by the male to a hermaphrodite after initial contact following mate finding. The male stops forward locomotion, presses the ventral side of his tail against his partner's body, and begins moving backward along the hermaphrodite. Male response behavior is initiated when sensory neurons located in the rays of his tail contact a potential mate.
1 P28548 (/IMP)
Vulval location GO:0034608
Location, by the male, of his partner's vulva when backing along the ventral side of the hermaphrodite during mating. The male stops at the vulva, coordinates his movements to the hermaphrodite's, and positions his tail precisely over the vulva so that he may insert his spicules and ejaculate.
1 P28548 (/IMP)

There are 25 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein kinase CK2 complex GO:0005956
A protein complex that possesses protein serine/threonine kinase activity, and contains two catalytic alpha subunits and two regulatory beta subunits. Protein kinase CK2 complexes are found in nearly every subcellular compartment, and can phosphorylate many protein substrates in addition to casein.
41 P28548 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA)
(31 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
26 Q383J7 (/IDA) Q383J7 (/IDA) Q383J7 (/IDA) Q383J7 (/IDA) Q7KV12 (/IDA) Q7KV13 (/IDA) Q7KV14 (/IDA) Q7KV15 (/IDA) Q7KV18 (/IDA) Q7KV19 (/IDA)
(16 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
23 P28548 (/IDA) Q7KV12 (/IDA) Q7KV13 (/IDA) Q7KV14 (/IDA) Q7KV15 (/IDA) Q7KV18 (/IDA) Q7KV19 (/IDA) Q7KV22 (/IDA) Q7KV23 (/IDA) Q8IIW5 (/IDA)
(13 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
18 P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P38930 (/TAS) P43639 (/TAS)
(8 more)
UTP-C complex GO:0034456
A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Rrp7p, Utp22p, Ckb1p, Cka1p, Ckb2p and Cka2p.
18 P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P43639 (/IDA)
(8 more)
CURI complex GO:0032545
A protein complex that is involved in the transcription of ribosomal genes. In Saccharomyces this complex consists of Ckb2p, Utp22p, Rrp7p and Ifh1p.
9 P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA) P38930 (/IDA)
Nuclear lumen GO:0031981
The volume enclosed by the nuclear inner membrane.
4 Q383J7 (/IDA) Q383J7 (/IDA) Q383J7 (/IDA) Q383J7 (/IDA)
Ciliary basal body GO:0036064
A membrane-tethered, short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium (also called flagellum) that is similar in structure to a centriole and derives from it. The cilium basal body is the site of assembly and remodelling of the cilium and serves as a nucleation site for axoneme growth. As well as anchoring the cilium, it is thought to provide a selective gateway regulating the entry of ciliary proteins and vesicles by intraflagellar transport.
4 Q383J7 (/IDA) Q383J7 (/IDA) Q383J7 (/IDA) Q383J7 (/IDA)
Ciliary plasm GO:0097014
All of the contents of a cilium, excluding the plasma membrane surrounding the cilium.
4 Q383J7 (/IDA) Q383J7 (/IDA) Q383J7 (/IDA) Q383J7 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
3 O94281 (/HDA) P28548 (/HDA) P40232 (/HDA)
Protein kinase CK2 complex GO:0005956
A protein complex that possesses protein serine/threonine kinase activity, and contains two catalytic alpha subunits and two regulatory beta subunits. Protein kinase CK2 complexes are found in nearly every subcellular compartment, and can phosphorylate many protein substrates in addition to casein.
2 B8K3A5 (/ISO) O94281 (/ISO)
Protein kinase CK2 complex GO:0005956
A protein complex that possesses protein serine/threonine kinase activity, and contains two catalytic alpha subunits and two regulatory beta subunits. Protein kinase CK2 complexes are found in nearly every subcellular compartment, and can phosphorylate many protein substrates in addition to casein.
2 A0A1D8PNI6 (/ISS) Q5ACW5 (/ISS)
UTP-C complex GO:0034456
A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Rrp7p, Utp22p, Ckb1p, Cka1p, Ckb2p and Cka2p.
2 O94281 (/ISO) P40232 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q54PF1 (/ISS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q4Q0Q3 (/ISO)
Cilium GO:0005929
A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.
1 P28548 (/IDA)
Protein kinase CK2 complex GO:0005956
A protein complex that possesses protein serine/threonine kinase activity, and contains two catalytic alpha subunits and two regulatory beta subunits. Protein kinase CK2 complexes are found in nearly every subcellular compartment, and can phosphorylate many protein substrates in addition to casein.
1 P40232 (/IPI)
Axon GO:0030424
The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
1 P28548 (/IDA)
Dendrite GO:0030425
A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
1 P28548 (/IDA)
Nuclear lumen GO:0031981
The volume enclosed by the nuclear inner membrane.
1 Q4Q0Q3 (/ISO)
Ciliary basal body GO:0036064
A membrane-tethered, short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium (also called flagellum) that is similar in structure to a centriole and derives from it. The cilium basal body is the site of assembly and remodelling of the cilium and serves as a nucleation site for axoneme growth. As well as anchoring the cilium, it is thought to provide a selective gateway regulating the entry of ciliary proteins and vesicles by intraflagellar transport.
1 Q4Q0Q3 (/ISO)
Neuronal cell body GO:0043025
The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
1 P28548 (/IDA)
Mitotic spindle pole body GO:0044732
The microtubule organizing center that forms as part of the mitotic cell cycle; functionally homologous to the animal cell centrosome.
1 P40232 (/HDA)
Ciliary plasm GO:0097014
All of the contents of a cilium, excluding the plasma membrane surrounding the cilium.
1 Q4Q0Q3 (/ISO)
Non-motile cilium GO:0097730
A cilium which may have a variable array of axonemal microtubules but does not contain molecular motors.
1 P28548 (/IDA)