CATH Superfamily 2.160.20.10
Single-stranded right-handed beta-helix, Pectin lyase-like
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Single-stranded right-handed beta-helix, Pectin lyase-like
".
FunFam 1: Pectinesterase
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 6 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Pectinesterase activity GO:0030599
Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
|
8 | O49006 (/ISS) Q42534 (/ISS) Q43867 (/ISS) Q43867 (/ISS) Q8RXK7 (/ISS) Q9FK05 (/ISS) Q9FK05 (/ISS) Q9LUL8 (/ISS) |
Pectinesterase activity GO:0030599
Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
|
5 | O49006 (/IMP) O49298 (/IMP) Q8RXK7 (/IMP) Q9LYT5 (/IMP) Q9LYT5 (/IMP) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
2 | Q43867 (/IPI) Q43867 (/IPI) |
Pectinesterase activity GO:0030599
Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
|
2 | O49006 (/IDA) Q9M3B0 (/IDA) |
Pectinesterase inhibitor activity GO:0046910
Stops, prevents or reduces the activity of any pectinesterase enzyme.
|
2 | Q9FF78 (/IMP) Q9FF78 (/IMP) |
Protein C-terminal methylesterase activity GO:0051722
Catalysis of the reaction: C-terminal protein amino acid methyl ester + H2O = protein amino acid + methanol.
|
2 | Q43867 (/IDA) Q43867 (/IDA) |
There are 10 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Defense response to Gram-negative bacterium GO:0050829
Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism.
|
4 | O22149 (/IMP) O49006 (/IMP) O81415 (/IMP) Q9SMY7 (/IMP) |
Response to bacterium GO:0009617
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
|
3 | O22149 (/IEP) O48711 (/IEP) Q1JPL7 (/IEP) |
Response to fungus GO:0009620
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.
|
3 | O22149 (/IEP) O49006 (/IEP) Q8RXK7 (/IEP) |
Mucilage pectin biosynthetic process GO:0048358
The chemical reactions and pathways resulting in the formation of the pectin component of mucilage.
|
2 | Q9FJ21 (/IMP) Q9FJ21 (/IMP) |
Mucilage metabolic process involved in seed coat development GO:0048359
The chemical reactions and pathways involving mucilage that occur as part of seed coat development; mucilage is normally synthesized during seed coat development.
|
2 | Q9FJ21 (/IMP) Q9FJ21 (/IMP) |
Regulation of cell wall pectin metabolic process GO:1902066
Any process that modulates the frequency, rate or extent of cell wall pectin metabolic process.
|
2 | Q9FF78 (/IMP) Q9FF78 (/IMP) |
Response to cold GO:0009409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
|
1 | Q8RXK7 (/IEP) |
Response to nematode GO:0009624
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.
|
1 | O49006 (/IMP) |
Response to brassinosteroid GO:0009741
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus.
|
1 | Q8RXK7 (/IEP) |
Regulation of stomatal movement GO:0010119
Any process that modulates the frequency, rate or extent of stomatal movement.
|
1 | Q9M3B0 (/IMP) |
There are 14 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
5 | O49006 (/IDA) Q43867 (/IDA) Q43867 (/IDA) Q8L7Q7 (/IDA) Q9M3B0 (/IDA) |
Plant-type cell wall GO:0009505
A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances.
|
4 | Q42534 (/IDA) Q9LXK7 (/IDA) Q9LXK7 (/IDA) Q9M3B0 (/IDA) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
4 | O22149 (/IDA) Q3EAY9 (/IDA) Q43867 (/IDA) Q43867 (/IDA) |
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
|
3 | Q42534 (/ISS) Q43867 (/ISS) Q43867 (/ISS) |
Vacuolar membrane GO:0005774
The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell.
|
3 | Q1JPL7 (/IDA) Q43867 (/IDA) Q43867 (/IDA) |
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
|
3 | Q43867 (/IDA) Q43867 (/IDA) Q9LUL8 (/IDA) |
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
2 | O49006 (/IDA) Q1JPL7 (/IDA) |
Endosome GO:0005768
A vacuole to which materials ingested by endocytosis are delivered.
|
2 | Q43867 (/IDA) Q43867 (/IDA) |
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
|
2 | Q43867 (/IDA) Q43867 (/IDA) |
Trans-Golgi network GO:0005802
The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.
|
2 | Q43867 (/IDA) Q43867 (/IDA) |
Apoplast GO:0048046
The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
|
2 | O23447 (/IDA) O49006 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | O49006 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | Q1JPL7 (/IDA) |
Pollen tube GO:0090406
A tubular cell projection that is part of a pollen tube cell and extends from a pollen grain.
|
1 | Q8GXA1 (/IDA) |