The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
YVTN repeat-like/Quinoprotein amine dehydrogenase
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 523: Transcriptional modulator

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 4 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
19 Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q12206 (/IDA) Q12206 (/IDA)
(9 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
11 Q12206 (/IPI) Q12206 (/IPI) Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI)
(1 more)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
2 Q12206 (/IDA) Q12206 (/IDA)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
2 Q12206 (/IMP) Q12206 (/IMP)

There are 14 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
19 Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q12206 (/IMP) Q12206 (/IMP)
(9 more)
Negative regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle GO:0010674
Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as part of the meiotic cell cycle.
11 Q12206 (/IGI) Q12206 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI)
(1 more)
Negative regulation of chromatin silencing at telomere GO:0031939
Any process that stops, prevents, or reduces the frequency, rate or extent of chromatin silencing at telomeres.
11 Q12206 (/IGI) Q12206 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI)
(1 more)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
11 Q12206 (/IDA) Q12206 (/IDA) Q12363 (/IDA) Q12363 (/IDA) Q12363 (/IDA) Q12363 (/IDA) Q12363 (/IDA) Q12363 (/IDA) Q12363 (/IDA) Q12363 (/IDA)
(1 more)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
11 Q12206 (/IGI) Q12206 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI)
(1 more)
Negative regulation of chromatin silencing at silent mating-type cassette GO:0061186
Any process that decreases the frequency, rate, or extent of chromatin silencing at silent mating-type cassette. Chromatin silencing at silent mating-type cassette is the repression of transcription at silent mating-type loci by altering the structure of chromatin.
11 Q12206 (/IGI) Q12206 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI) Q12363 (/IGI)
(1 more)
Protein import into nucleus GO:0006606
The directed movement of a protein from the cytoplasm to the nucleus.
9 Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP)
Protein import into nucleus GO:0006606
The directed movement of a protein from the cytoplasm to the nucleus.
9 Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI) Q12363 (/IPI)
Maintenance of protein location in nucleus GO:0051457
Any process in which a protein is maintained in the nucleus and prevented from moving elsewhere. These include sequestration within the nucleus, protein stabilization to prevent transport elsewhere and the active retrieval of proteins that escape the nucleus.
9 Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP) Q12363 (/IMP)
Negative regulation of transcription by RNA polymerase I GO:0016479
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase I.
8 Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP)
Negative regulation of chromatin silencing at telomere GO:0031939
Any process that stops, prevents, or reduces the frequency, rate or extent of chromatin silencing at telomeres.
8 Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP)
Regulation of meiotic nuclear division GO:0040020
Any process that modulates the frequency, rate or extent of meiotic nuclear division, the process in which the nucleus of a diploid cell divides twice forming four haploid cells, one or more of which usually function as gametes.
8 Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP) Q03010 (/IMP)
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
2 Q12206 (/IMP) Q12206 (/IMP)
Cellular protein-containing complex localization GO:0034629
A protein complex localization process that takes place at the cellular level; as a result, a protein complex is transported to, or maintained in, a specific location within a cell.
2 Q12206 (/IMP) Q12206 (/IMP)

There are 8 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
19 Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q12206 (/IDA) Q12206 (/IDA)
(9 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
9 Q12363 (/HDA) Q12363 (/HDA) Q12363 (/HDA) Q12363 (/HDA) Q12363 (/HDA) Q12363 (/HDA) Q12363 (/HDA) Q12363 (/HDA) Q12363 (/HDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
8 Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA)
Rpd3S complex GO:0032221
A eukaryotically conserved histone deacetylase complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; Rpd3p, Sin3p, Ume1p, Rco1p and Eaf3 in Saccharomyces; homologs thereof in other species).
8 Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA)
Rpd3L complex GO:0033698
A histone deacetylase complex which deacetylates histones across gene coding regions. Composed of a catalytic histone deacetylase subunit, an Sds-3 family protein, a SIN3 family co-repressor, a WD repeat protein, and a zf- PHD finger (Clr6, Sds3, Pst1, Prw1, Png2 in Schizosaccharomyces pombe; Rpd3p, Sin3p, Ume1p, Pho23p, Sap30p, Sds3p, Cti6p, Rxt2p, Rxt3p, Dep1p, Ume6p and Ash1p in Saccharomyces cerevisiae).
8 Q03010 (/HDA) Q03010 (/HDA) Q03010 (/HDA) Q03010 (/HDA) Q03010 (/HDA) Q03010 (/HDA) Q03010 (/HDA) Q03010 (/HDA)
Rpd3L complex GO:0033698
A histone deacetylase complex which deacetylates histones across gene coding regions. Composed of a catalytic histone deacetylase subunit, an Sds-3 family protein, a SIN3 family co-repressor, a WD repeat protein, and a zf- PHD finger (Clr6, Sds3, Pst1, Prw1, Png2 in Schizosaccharomyces pombe; Rpd3p, Sin3p, Ume1p, Pho23p, Sap30p, Sds3p, Cti6p, Rxt2p, Rxt3p, Dep1p, Ume6p and Ash1p in Saccharomyces cerevisiae).
8 Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA) Q03010 (/IDA)
Rpd3L-Expanded complex GO:0070210
A protein complex that contains a histone deacetylase and is part of the chromatin remodeling machinery. In Saccharomyces cerevisiae this complex contains the Rpd3p, Sin3p, Ume1p, Pho23p, Sap30p, Sds3p, Cti6p, Rxt2p, Rxt3p, Dep1p, Ume6p, Ash1p, Dot6p, Snt1, Sif2p, Set3p, Hos2p, Tos4p and Tod6p proteins.
8 Q03010 (/HDA) Q03010 (/HDA) Q03010 (/HDA) Q03010 (/HDA) Q03010 (/HDA) Q03010 (/HDA) Q03010 (/HDA) Q03010 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
2 Q12206 (/IDA) Q12206 (/IDA)
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