The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Cysteine Rich Protein
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 51: LIM domain transcription factor LMO4

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 8 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
125 P61968 (/IPI) P61968 (/IPI) P61968 (/IPI) P61968 (/IPI) P61968 (/IPI) P61968 (/IPI) P61968 (/IPI) P61968 (/IPI) P61968 (/IPI) P61968 (/IPI)
(115 more)
Enhancer sequence-specific DNA binding GO:0001158
Interacting selectively and non-covalently with a specific sequence of DNA that is part of an enhancer, a transcription regulatory region that is somewhat distal from the core promoter and which enhances transcription from that promoter.
62 P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA)
(52 more)
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
62 P61968 (/TAS) P61968 (/TAS) P61968 (/TAS) P61968 (/TAS) P61968 (/TAS) P61968 (/TAS) P61968 (/TAS) P61968 (/TAS) P61968 (/TAS) P61968 (/TAS)
(52 more)
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
62 P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA)
(52 more)
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
62 P61969 (/IPI) P61969 (/IPI) P61969 (/IPI) P61969 (/IPI) P61969 (/IPI) P61969 (/IPI) P61969 (/IPI) P61969 (/IPI) P61969 (/IPI) P61969 (/IPI)
(52 more)
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
62 P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS)
(52 more)
Transcription coregulator activity GO:0003712
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators.
5 Q5FVB2 (/ISS) Q6DJ06 (/ISS) Q6DJ06 (/ISS) Q801P0 (/ISS) Q801P0 (/ISS)
Transcription coregulator activity GO:0003712
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators.
1 Q8AW92 (/IMP)

There are 27 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Neural tube closure GO:0001843
The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline.
124 P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS)
(114 more)
Regulation of cell migration GO:0030334
Any process that modulates the frequency, rate or extent of cell migration.
124 P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS)
(114 more)
Positive regulation of kinase activity GO:0033674
Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
124 P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS)
(114 more)
Neural tube closure GO:0001843
The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline.
62 P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP)
(52 more)
Ventricular septum development GO:0003281
The progression of the ventricular septum over time from its formation to the mature structure.
62 P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP)
(52 more)
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
62 P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA)
(52 more)
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
62 P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS)
(52 more)
Ventral spinal cord interneuron differentiation GO:0021514
The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of ventral spinal cord interneurons. Ventral spinal cord interneurons are cells located in the ventral portion of the spinal cord that transmit signals between sensory and motor neurons and are required for reflexive responses. Differentiation includes the processes involved in commitment of a cell to a specific fate.
62 P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA)
(52 more)
Spinal cord motor neuron differentiation GO:0021522
The process in which neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of motor neurons. Motor neurons innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate.
62 P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA)
(52 more)
Spinal cord association neuron differentiation GO:0021527
The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of association neurons. Association neurons are cells located in the dorsal portion of the spinal cord that integrate sensory input. Differentiation includes the processes involved in commitment of a cell to a specific fate.
62 P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI)
(52 more)
Regulation of cell migration GO:0030334
Any process that modulates the frequency, rate or extent of cell migration.
62 P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA)
(52 more)
Negative regulation of protein complex assembly GO:0031333
Any process that stops, prevents, or reduces the frequency, rate or extent of protein complex assembly.
62 P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA)
(52 more)
Positive regulation of kinase activity GO:0033674
Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
62 P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA)
(52 more)
Regulation of cell fate specification GO:0042659
Any process that mediates the adoption of a specific fate by a cell.
62 P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP)
(52 more)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
62 P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI)
(52 more)
Thymus development GO:0048538
The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components.
62 P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI) P61969 (/IGI)
(52 more)
Regulation of cell activation GO:0050865
Any process that modulates the frequency, rate or extent of cell activation, the change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand.
62 P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP) P61969 (/IMP)
(52 more)
Mesoderm development GO:0007498
The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue.
5 Q5FVB2 (/ISS) Q6DJ06 (/ISS) Q6DJ06 (/ISS) Q801P0 (/ISS) Q801P0 (/ISS)
Negative regulation of neuron differentiation GO:0045665
Any process that stops, prevents, or reduces the frequency, rate or extent of neuron differentiation.
5 Q5FVB2 (/ISS) Q6DJ06 (/ISS) Q6DJ06 (/ISS) Q801P0 (/ISS) Q801P0 (/ISS)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
5 Q5FVB2 (/ISS) Q6DJ06 (/ISS) Q6DJ06 (/ISS) Q801P0 (/ISS) Q801P0 (/ISS)
Forebrain development GO:0030900
The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions).
2 A0A2R8RLI6 (/IDA) Q8QG63 (/IDA)
Forebrain development GO:0030900
The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions).
2 A0A2R8RLI6 (/IMP) Q8QG63 (/IMP)
Embryonic camera-type eye development GO:0031076
The process occurring during the embryonic phase whose specific outcome is the progression of the eye over time, from its formation to the mature structure.
2 A0A2R8RLI6 (/IDA) Q8QG63 (/IDA)
Embryonic camera-type eye development GO:0031076
The process occurring during the embryonic phase whose specific outcome is the progression of the eye over time, from its formation to the mature structure.
2 A0A2R8RLI6 (/IMP) Q8QG63 (/IMP)
Mesoderm development GO:0007498
The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue.
1 Q8AW92 (/IMP)
Negative regulation of neuron differentiation GO:0045665
Any process that stops, prevents, or reduces the frequency, rate or extent of neuron differentiation.
1 Q8AW92 (/IMP)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
1 Q8AW92 (/IMP)

There are 4 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cell leading edge GO:0031252
The area of a motile cell closest to the direction of movement.
124 P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS)
(114 more)
Transcription factor complex GO:0005667
A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
62 P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA)
(52 more)
Transcription factor complex GO:0005667
A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
62 P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS) P61968 (/ISS)
(52 more)
Cell leading edge GO:0031252
The area of a motile cell closest to the direction of movement.
62 P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA) P61969 (/IDA)
(52 more)
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