CATH Superfamily 1.25.40.570
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: Putative cop9 signalosome complex subunit 2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 5 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
127 |
P61201 (/IPI)
P61201 (/IPI)
P61201 (/IPI)
P61201 (/IPI)
P61201 (/IPI)
P61201 (/IPI)
P61201 (/IPI)
P61201 (/IPI)
P61201 (/IPI)
P61201 (/IPI)
(117 more) |
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
|
47 |
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
(37 more) |
Nuclear receptor binding GO:0016922
Interacting selectively and non-covalently, in a ligand dependent manner, with a nuclear receptor protein.
|
7 | Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) |
Nuclear hormone receptor binding GO:0035257
Interacting selectively and non-covalently with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell.
|
7 | Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) |
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
|
7 | Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) |
There are 25 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
47 |
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
(37 more) |
Negative regulation of nucleic acid-templated transcription GO:1903507
Any process that stops, prevents or reduces the frequency, rate or extent of nucleic acid-templated transcription.
|
42 |
P61201 (/ISS)
P61201 (/ISS)
P61201 (/ISS)
P61201 (/ISS)
P61201 (/ISS)
P61201 (/ISS)
P61201 (/ISS)
P61201 (/ISS)
P61201 (/ISS)
P61201 (/ISS)
(32 more) |
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
40 |
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
(30 more) |
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
40 |
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
(30 more) |
Protein deneddylation GO:0000338
The removal of a ubiquitin-like protein of the NEDD8 type from a protein.
|
40 |
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
(30 more) |
Nucleotide-excision repair, DNA damage recognition GO:0000715
The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix.
|
40 |
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
(30 more) |
Inner cell mass cell proliferation GO:0001833
The proliferation of cells in the inner cell mass.
|
40 |
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
(30 more) |
Transcription-coupled nucleotide-excision repair GO:0006283
The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway.
|
40 |
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
(30 more) |
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
|
40 |
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
(30 more) |
Protein phosphorylation GO:0006468
The process of introducing a phosphate group on to a protein.
|
40 |
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
(30 more) |
Signal transduction GO:0007165
The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
|
40 |
P61201 (/NAS)
P61201 (/NAS)
P61201 (/NAS)
P61201 (/NAS)
P61201 (/NAS)
P61201 (/NAS)
P61201 (/NAS)
P61201 (/NAS)
P61201 (/NAS)
P61201 (/NAS)
(30 more) |
Cell population proliferation GO:0008283
The multiplication or reproduction of cells, resulting in the expansion of a cell population.
|
40 |
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
(30 more) |
Neuron differentiation GO:0030182
The process in which a relatively unspecialized cell acquires specialized features of a neuron.
|
40 |
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
(30 more) |
Neuron differentiation GO:0030182
The process in which a relatively unspecialized cell acquires specialized features of a neuron.
|
40 |
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
(30 more) |
Skeletal muscle cell differentiation GO:0035914
The process in which a relatively unspecialized cell acquires specialized features of a skeletal muscle cell, a somatic cell located in skeletal muscle.
|
40 |
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
P61202 (/IMP)
(30 more) |
Post-translational protein modification GO:0043687
The process of covalently altering one or more amino acids in a protein after the protein has been completely translated and released from the ribosome.
|
40 |
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
(30 more) |
Negative regulation of nucleic acid-templated transcription GO:1903507
Any process that stops, prevents or reduces the frequency, rate or extent of nucleic acid-templated transcription.
|
40 |
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
P61203 (/IDA)
(30 more) |
Negative regulation of nucleic acid-templated transcription GO:1903507
Any process that stops, prevents or reduces the frequency, rate or extent of nucleic acid-templated transcription.
|
40 |
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
(30 more) |
Protein deneddylation GO:0000338
The removal of a ubiquitin-like protein of the NEDD8 type from a protein.
|
7 | Q94899 (/ISS) Q94899 (/ISS) Q94899 (/ISS) Q94899 (/ISS) Q94899 (/ISS) Q94899 (/ISS) Q94899 (/ISS) |
Multicellular organism development GO:0007275
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
|
7 | Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) |
Germ cell development GO:0007281
The process whose specific outcome is the progression of an immature germ cell over time, from its formation to the mature structure (gamete). A germ cell is any reproductive cell in a multicellular organism.
|
7 | Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) |
Female germ-line stem cell population maintenance GO:0036099
The process by which an organism or tissue maintains a population of female germ-line stem cells.
|
7 | Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) |
Male germ-line cyst encapsulation GO:0048140
Formation of a single follicular epithelium around the germ-line derived cells of a cyst formed in the male gonad.
|
7 | Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) |
Germarium-derived cystoblast division GO:0048142
The four rounds of incomplete mitosis undergone by a cystoblast to form a 16-cell cyst of interconnected cells within a germarium. Within the cyst, one cell differentiates into an oocyte while the rest become nurse cells. An example of this process is found in Drosophila melanogaster.
|
7 | Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) |
Protein stabilization GO:0050821
Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
|
7 | Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) Q94899 (/IMP) |
There are 12 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
COP9 signalosome GO:0008180
A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome.
|
87 |
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
(77 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
80 |
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
P61202 (/IDA)
(70 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
47 |
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
P61201 (/IDA)
(37 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
40 |
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
P61202 (/ISO)
(30 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
40 |
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
(30 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
40 |
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
(30 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
40 |
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
P61201 (/TAS)
(30 more) |
COP9 signalosome GO:0008180
A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome.
|
40 |
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
P61202 (/ISS)
(30 more) |
COP9 signalosome GO:0008180
A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome.
|
7 | Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) |
COP9 signalosome GO:0008180
A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome.
|
7 | Q94899 (/NAS) Q94899 (/NAS) Q94899 (/NAS) Q94899 (/NAS) Q94899 (/NAS) Q94899 (/NAS) Q94899 (/NAS) |
Repressor ecdysone receptor complex GO:0008231
A protein complex consisting of a heterodimer of Ecdysone receptor (EcR) and ultraspiracle (usp) plus an associated corepressor such as SMRTER, which represses transcription of target genes.
|
7 | Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) Q94899 (/IPI) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | Q6IQT4 (/ISS) Q6IQT4 (/ISS) |