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CATH Superfamily 1.25.40.1040

The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 2: Cleavage stimulation factor subunit 3

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 2 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
 27 A0JPN7 (/IPI) F1M4W7 (/IPI) Q12996 (/IPI) Q12996 (/IPI) Q12996 (/IPI) Q12996 (/IPI) Q12996 (/IPI) Q12996 (/IPI) Q12996 (/IPI) Q12996 (/IPI)
(17 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
 25 Q12996 (/HDA) Q12996 (/HDA) Q12996 (/HDA) Q12996 (/HDA) Q12996 (/HDA) Q12996 (/HDA) Q12996 (/HDA) Q12996 (/HDA) Q12996 (/HDA) Q12996 (/HDA)
(15 more)

There are 5 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
 25 Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS)
(15 more)
Termination of RNA polymerase II transcription GO:0006369
The process in which the synthesis of an RNA molecule by RNA polymerase II using a DNA template is completed.
 25 Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS)
(15 more)
MRNA polyadenylation GO:0006378
The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.
 25 Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS)
(15 more)
MRNA cleavage GO:0006379
Any process in which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner.
 25 Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS)
(15 more)
MRNA 3'-end processing GO:0031124
Any process involved in forming the mature 3' end of an mRNA molecule.
 25 Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS)
(15 more)

There are 4 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
 25 Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS)
(15 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
 25 Q12996 (/IDA) Q12996 (/IDA) Q12996 (/IDA) Q12996 (/IDA) Q12996 (/IDA) Q12996 (/IDA) Q12996 (/IDA) Q12996 (/IDA) Q12996 (/IDA) Q12996 (/IDA)
(15 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
 25 Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS) Q12996 (/TAS)
(15 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
 2 Q99LI7 (/ISO) Q99LI7 (/ISO)