CATH Superfamily 1.20.5.170
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 95: Transcription factor SPN1
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 3 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
RNA polymerase II complex binding GO:0000993
Interacting selectively and non-covalently with RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits.
|
7 | Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) |
|
RNA polymerase II transcription factor binding GO:0001085
Interacting selectively and non-covalently with an RNA polymerase II transcription factor, any protein required to initiate or regulate transcription by RNA polymerase II.
|
7 | Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
7 | Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) |
There are 6 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
7 | Q06505 (/IGI) Q06505 (/IGI) Q06505 (/IGI) Q06505 (/IGI) Q06505 (/IGI) Q06505 (/IGI) Q06505 (/IGI) |
|
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
7 | Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) |
|
Poly(A)+ mRNA export from nucleus GO:0016973
The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm.
|
7 | Q06505 (/IMP) Q06505 (/IMP) Q06505 (/IMP) Q06505 (/IMP) Q06505 (/IMP) Q06505 (/IMP) Q06505 (/IMP) |
|
Regulation of transcription elongation from RNA polymerase II promoter GO:0034243
Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
|
7 | Q06505 (/IGI) Q06505 (/IGI) Q06505 (/IGI) Q06505 (/IGI) Q06505 (/IGI) Q06505 (/IGI) Q06505 (/IGI) |
|
Regulation of nucleosome density GO:0060303
Any process that modulates the number of nucleosomes in a given region of a chromosome.
|
7 | Q06505 (/IMP) Q06505 (/IMP) Q06505 (/IMP) Q06505 (/IMP) Q06505 (/IMP) Q06505 (/IMP) Q06505 (/IMP) |
|
Chromatin maintenance GO:0070827
The chromatin organization process that preserves chromatin in a stable functional or structural state.
|
7 | Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) Q06505 (/IPI) |
There are 1 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
7 | Q06505 (/IC) Q06505 (/IC) Q06505 (/IC) Q06505 (/IC) Q06505 (/IC) Q06505 (/IC) Q06505 (/IC) |