The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: Vacuolar protein sorting-associated protein 28 hom...

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 3 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
21 Q548N1 (/IPI) Q548N1 (/IPI) Q548N1 (/IPI) Q548N1 (/IPI) Q548N1 (/IPI) Q548N1 (/IPI) Q548N1 (/IPI) Q548N1 (/IPI) Q9D1C8 (/IPI) Q9UK41 (/IPI)
(11 more)
Ubiquitin binding GO:0043130
Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
8 Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA)
Ubiquitin binding GO:0043130
Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
1 Q9D1C8 (/ISO)

There are 27 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway GO:0043162
The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the multivesicular body (MVB) sorting pathway; ubiquitin-tagged proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation.
12 Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP)
(2 more)
Endosomal transport GO:0016197
The directed movement of substances mediated by an endosome, a membrane-bounded organelle that carries materials enclosed in the lumen or located in the endosomal membrane.
8 Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS)
Macroautophagy GO:0016236
The major inducible pathway for the general turnover of cytoplasmic constituents in eukaryotic cells, it is also responsible for the degradation of active cytoplasmic enzymes and organelles during nutrient starvation. Macroautophagy involves the formation of double-membrane-bounded autophagosomes which enclose the cytoplasmic constituent targeted for degradation in a membrane-bounded structure. Autophagosomes then fuse with a lysosome (or vacuole) releasing single-membrane-bounded autophagic bodies that are then degraded within the lysosome (or vacuole). Some types of macroautophagy, e.g. pexophagy, mitophagy, involve selective targeting of the targets to be degraded.
8 Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS)
Viral life cycle GO:0019058
A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
8 Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS)
Negative regulation of protein ubiquitination GO:0031397
Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of ubiquitin groups to a protein.
8 Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA)
Multivesicular body assembly GO:0036258
The aggregation, arrangement and bonding together of a set of components to form a multivesicular body, a type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm.
8 Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS)
Viral budding via host ESCRT complex GO:0039702
Viral budding which uses a host ESCRT protein complex, or complexes, to mediate the budding process.
8 Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS)
Ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway GO:0043162
The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the multivesicular body (MVB) sorting pathway; ubiquitin-tagged proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation.
8 Q9UK41 (/IC) Q9UK41 (/IC) Q9UK41 (/IC) Q9UK41 (/IC) Q9UK41 (/IC) Q9UK41 (/IC) Q9UK41 (/IC) Q9UK41 (/IC)
Positive regulation of protein catabolic process GO:0045732
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
8 Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP)
Intracellular transport of virus GO:0075733
The directed movement of a virus, or part of a virus, within the host cell.
8 Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS)
Positive regulation of ubiquitin-dependent endocytosis GO:2000397
Any process that activates or increases the frequency, rate or extent of ubiquitin-dependent endocytosis.
8 Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP) Q9UK41 (/IMP)
Negative regulation of protein ubiquitination GO:0031397
Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of ubiquitin groups to a protein.
7 B5DEN9 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q9D1C8 (/ISS)
Ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway GO:0043162
The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the multivesicular body (MVB) sorting pathway; ubiquitin-tagged proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation.
7 B5DEN9 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q9D1C8 (/ISS)
Autophagy GO:0006914
The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
4 Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP)
Sperm individualization GO:0007291
The resolution of the male germline syncytium or cyst into individual gametes by packaging each spermatid into its own plasma membrane.
4 Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP)
Embryo development ending in birth or egg hatching GO:0009792
The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell.
4 Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP)
Regulation of multivesicular body size GO:0010796
Any process that modulates the volume of a multivesicular body, a type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles.
4 Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP)
Neuron remodeling GO:0016322
The developmentally regulated remodeling of neuronal projections such as pruning to eliminate the extra dendrites and axons projections set up in early stages of nervous system development.
4 Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP)
Actin cytoskeleton organization GO:0030036
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
4 Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP)
Endosome transport via multivesicular body sorting pathway GO:0032509
The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment.
4 Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP)
Negative regulation of growth of symbiont in host GO:0044130
Any process in which the symbiont stops, prevents or reduces its increase in size or mass within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction.
4 Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP)
Compound eye development GO:0048749
The process whose specific outcome is the progression of the compound eye over time, from its formation to the mature structure. The compound eye is an organ of sight that contains multiple repeating units, often arranged hexagonally. Each unit has its own lens and photoreceptor cell(s) and can generate either a single pixelated image or multiple images, per eye.
4 Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP)
Autophagosome maturation GO:0097352
Removal of PI3P and Atg8/LC3 after the closure of the phagophore and before the fusion with the endosome/lysosome (e.g. mammals and insects) or vacuole (yeast), and that very likely destabilizes other Atg proteins and thus enables their efficient dissociation and recycling.
4 Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP) Q9V359 (/IMP)
Negative regulation of protein ubiquitination GO:0031397
Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of ubiquitin groups to a protein.
1 Q9D1C8 (/ISO)
Ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway GO:0043162
The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the multivesicular body (MVB) sorting pathway; ubiquitin-tagged proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation.
1 Q9D1C8 (/ISO)
Positive regulation of protein catabolic process GO:0045732
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
1 Q9D1C8 (/ISO)
Positive regulation of ubiquitin-dependent endocytosis GO:2000397
Any process that activates or increases the frequency, rate or extent of ubiquitin-dependent endocytosis.
1 Q9D1C8 (/ISO)

There are 19 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
ESCRT I complex GO:0000813
An endosomal sorting complex required for transport. It consists of the class E vacuolar protein sorting (Vps) proteins and interacts with ubiquitinated cargoes.
12 Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9V359 (/IDA) Q9V359 (/IDA)
(2 more)
ESCRT I complex GO:0000813
An endosomal sorting complex required for transport. It consists of the class E vacuolar protein sorting (Vps) proteins and interacts with ubiquitinated cargoes.
11 B5DEN9 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q9D1C8 (/ISS) Q9V359 (/ISS) Q9V359 (/ISS) Q9V359 (/ISS)
(1 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
9 B5DEN9 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA)
ESCRT I complex GO:0000813
An endosomal sorting complex required for transport. It consists of the class E vacuolar protein sorting (Vps) proteins and interacts with ubiquitinated cargoes.
8 Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
8 Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA)
Endosome GO:0005768
A vacuole to which materials ingested by endocytosis are delivered.
8 Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA)
Early endosome GO:0005769
A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
8 Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
8 Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA)
Endosome membrane GO:0010008
The lipid bilayer surrounding an endosome.
8 Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA) Q9UK41 (/IDA)
Endosome membrane GO:0010008
The lipid bilayer surrounding an endosome.
8 Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS) Q9UK41 (/TAS)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
8 Q9UK41 (/HDA) Q9UK41 (/HDA) Q9UK41 (/HDA) Q9UK41 (/HDA) Q9UK41 (/HDA) Q9UK41 (/HDA) Q9UK41 (/HDA) Q9UK41 (/HDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
7 B5DEN9 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q3T178 (/ISS) Q9D1C8 (/ISS)
ESCRT I complex GO:0000813
An endosomal sorting complex required for transport. It consists of the class E vacuolar protein sorting (Vps) proteins and interacts with ubiquitinated cargoes.
1 Q9D1C8 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q9D1C8 (/ISO)
Endosome GO:0005768
A vacuole to which materials ingested by endocytosis are delivered.
1 Q9D1C8 (/ISO)
Early endosome GO:0005769
A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
1 Q9D1C8 (/ISO)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q9D1C8 (/ISO)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
1 Q9D1C8 (/ISO)
Endosome membrane GO:0010008
The lipid bilayer surrounding an endosome.
1 Q9D1C8 (/ISO)
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