The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Signal recognition particle SRP54, nucleotide-binding domain
".
FunFam 3: Signal recognition particle 54 kDa protein
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 20 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
|
196 |
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
(186 more) |
Drug binding GO:0008144
Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
|
196 |
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
(186 more) |
7S RNA binding GO:0008312
Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
|
196 |
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
(186 more) |
GDP binding GO:0019003
Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
|
196 |
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
(186 more) |
Endoplasmic reticulum signal peptide binding GO:0030942
Interacting selectively and non-covalently with an endoplasmic reticulum signal peptide, a specific peptide sequence that acts as a signal to localize the protein within the endoplasmic reticulum.
|
196 |
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
(186 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
49 |
P61011 (/HDA)
P61011 (/HDA)
P61011 (/HDA)
P61011 (/HDA)
P61011 (/HDA)
P61011 (/HDA)
P61011 (/HDA)
P61011 (/HDA)
P61011 (/HDA)
P61011 (/HDA)
(39 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
49 |
P61011 (/IPI)
P61011 (/IPI)
P61011 (/IPI)
P61011 (/IPI)
P61011 (/IPI)
P61011 (/IPI)
P61011 (/IPI)
P61011 (/IPI)
P61011 (/IPI)
P61011 (/IPI)
(39 more) |
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
|
49 |
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
(39 more) |
Drug binding GO:0008144
Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
|
49 |
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
(39 more) |
7S RNA binding GO:0008312
Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
|
49 |
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
(39 more) |
GDP binding GO:0019003
Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
|
49 |
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
(39 more) |
Endoplasmic reticulum signal peptide binding GO:0030942
Interacting selectively and non-covalently with an endoplasmic reticulum signal peptide, a specific peptide sequence that acts as a signal to localize the protein within the endoplasmic reticulum.
|
49 |
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
(39 more) |
Endoplasmic reticulum signal peptide binding GO:0030942
Interacting selectively and non-covalently with an endoplasmic reticulum signal peptide, a specific peptide sequence that acts as a signal to localize the protein within the endoplasmic reticulum.
|
49 |
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
(39 more) |
Ribonucleoprotein complex binding GO:0043021
Interacting selectively and non-covalently with any complex of RNA and protein.
|
49 |
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
(39 more) |
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
|
3 | A0A1W2P809 (/ISO) P14576 (/ISO) P14576 (/ISO) |
Drug binding GO:0008144
Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
|
3 | A0A1W2P809 (/ISO) P14576 (/ISO) P14576 (/ISO) |
GDP binding GO:0019003
Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
|
3 | A0A1W2P809 (/ISO) P14576 (/ISO) P14576 (/ISO) |
Endoplasmic reticulum signal peptide binding GO:0030942
Interacting selectively and non-covalently with an endoplasmic reticulum signal peptide, a specific peptide sequence that acts as a signal to localize the protein within the endoplasmic reticulum.
|
3 | A0A1W2P809 (/ISO) P14576 (/ISO) P14576 (/ISO) |
7S RNA binding GO:0008312
Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
|
2 | P14576 (/ISO) P14576 (/ISO) |
Ribonucleoprotein complex binding GO:0043021
Interacting selectively and non-covalently with any complex of RNA and protein.
|
2 | P14576 (/ISO) P14576 (/ISO) |
There are 13 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
|
196 |
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
(186 more) |
Protein targeting to ER GO:0045047
The process of directing proteins towards the endoplasmic reticulum (ER) using signals contained within the protein. One common mechanism uses a 16- to 30-residue signal sequence, typically located at the N-terminus of the protein and containing positively charged amino acids followed by a continuous stretch of hydrophobic residues, which directs the ribosome to the ER membrane and initiates transport of the growing polypeptide across the ER membrane.
|
196 |
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
(186 more) |
Protein targeting to ER GO:0045047
The process of directing proteins towards the endoplasmic reticulum (ER) using signals contained within the protein. One common mechanism uses a 16- to 30-residue signal sequence, typically located at the N-terminus of the protein and containing positively charged amino acids followed by a continuous stretch of hydrophobic residues, which directs the ribosome to the ER membrane and initiates transport of the growing polypeptide across the ER membrane.
|
98 |
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
(88 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
49 |
P61011 (/IC)
P61011 (/IC)
P61011 (/IC)
P61011 (/IC)
P61011 (/IC)
P61011 (/IC)
P61011 (/IC)
P61011 (/IC)
P61011 (/IC)
P61011 (/IC)
(39 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
49 |
P61011 (/TAS)
P61011 (/TAS)
P61011 (/TAS)
P61011 (/TAS)
P61011 (/TAS)
P61011 (/TAS)
P61011 (/TAS)
P61011 (/TAS)
P61011 (/TAS)
P61011 (/TAS)
(39 more) |
SRP-dependent cotranslational protein targeting to membrane, translocation GO:0006616
The process during cotranslational membrane targeting wherein proteins move across a membrane. SRP and its receptor initiate the transfer of the nascent chain across the endoplasmic reticulum (ER) membrane; they then dissociate from the chain, which is transferred to a set of transmembrane proteins, collectively called the translocon. Once the nascent chain translocon complex is assembled, the elongating chain passes directly from the large ribosomal subunit into the centers of the translocon, a protein-lined channel within the membrane. The growing chain is never exposed to the cytosol and does not fold until it reaches the ER lumen.
|
49 |
P61010 (/IDA)
P61010 (/IDA)
P61010 (/IDA)
P61010 (/IDA)
P61010 (/IDA)
P61010 (/IDA)
P61010 (/IDA)
P61010 (/IDA)
P61010 (/IDA)
P61010 (/IDA)
(39 more) |
SRP-dependent cotranslational protein targeting to membrane, translocation GO:0006616
The process during cotranslational membrane targeting wherein proteins move across a membrane. SRP and its receptor initiate the transfer of the nascent chain across the endoplasmic reticulum (ER) membrane; they then dissociate from the chain, which is transferred to a set of transmembrane proteins, collectively called the translocon. Once the nascent chain translocon complex is assembled, the elongating chain passes directly from the large ribosomal subunit into the centers of the translocon, a protein-lined channel within the membrane. The growing chain is never exposed to the cytosol and does not fold until it reaches the ER lumen.
|
49 |
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
(39 more) |
SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition GO:0006617
The process in which SRP binds to the signal peptide in a nascent protein, causing protein elongation to pause, during cotranslational membrane targeting.
|
49 |
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
P61010 (/IMP)
(39 more) |
SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition GO:0006617
The process in which SRP binds to the signal peptide in a nascent protein, causing protein elongation to pause, during cotranslational membrane targeting.
|
49 |
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
P61011 (/ISS)
(39 more) |
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
|
49 |
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
(39 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
2 | P14576 (/ISO) P14576 (/ISO) |
Neutrophil chemotaxis GO:0030593
The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.
|
1 | Q7ZVN5 (/IMP) |
Exocrine pancreas development GO:0031017
The process whose specific outcome is the progression of the exocrine pancreas over time, from its formation to the mature structure. The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells.
|
1 | Q7ZVN5 (/IMP) |
There are 11 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
196 |
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
(186 more) |
Signal recognition particle, endoplasmic reticulum targeting GO:0005786
A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
|
196 |
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
P61010 (/ISS)
(186 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
98 |
P61010 (/TAS)
P61010 (/TAS)
P61010 (/TAS)
P61010 (/TAS)
P61010 (/TAS)
P61010 (/TAS)
P61010 (/TAS)
P61010 (/TAS)
P61010 (/TAS)
P61010 (/TAS)
(88 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
49 |
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
(39 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
49 |
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
(39 more) |
Signal recognition particle, endoplasmic reticulum targeting GO:0005786
A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
|
49 |
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
(39 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
49 |
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
P61011 (/IDA)
(39 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
3 | A0A1W2P809 (/ISO) P14576 (/ISO) P14576 (/ISO) |
Signal recognition particle, endoplasmic reticulum targeting GO:0005786
A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
|
3 | A0A1W2P809 (/ISO) P14576 (/ISO) P14576 (/ISO) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
3 | A0A1W2P809 (/ISO) P14576 (/ISO) P14576 (/ISO) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
2 | P14576 (/ISO) P14576 (/ISO) |