The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Signal recognition particle SRP54, nucleotide-binding domain
".
FunFam 1: Signal recognition particle GTPase
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 13 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
172 |
P0AGD7 (/IPI)
P0AGD7 (/IPI)
P0AGD7 (/IPI)
P0AGD7 (/IPI)
P0AGD7 (/IPI)
P0AGD7 (/IPI)
P0AGD7 (/IPI)
P0AGD7 (/IPI)
P0AGD7 (/IPI)
P0AGD7 (/IPI)
(162 more) |
GTPase activity GO:0003924
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
|
156 |
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
(146 more) |
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
|
155 |
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
(145 more) |
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
|
155 |
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
(145 more) |
7S RNA binding GO:0008312
Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
|
20 |
P20424 (/IDA)
P20424 (/IDA)
P20424 (/IDA)
P20424 (/IDA)
P20424 (/IDA)
P20424 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
(10 more) |
Signal sequence binding GO:0005048
Interacting selectively and non-covalently with a signal sequence, a specific peptide sequence found on protein precursors or mature proteins that dictates where the mature protein is localized.
|
14 |
Q8IKX4 (/ISS)
Q8IKX4 (/ISS)
Q8IKX4 (/ISS)
Q8IKX4 (/ISS)
Q8IKX4 (/ISS)
Q8IKX4 (/ISS)
Q8IKX4 (/ISS)
Q8IKX4 (/ISS)
Q8IKX4 (/ISS)
Q8IKX4 (/ISS)
(4 more) |
Ribosome binding GO:0043022
Interacting selectively and non-covalently with any part of a ribosome.
|
14 |
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
(4 more) |
Endoplasmic reticulum signal peptide binding GO:0030942
Interacting selectively and non-covalently with an endoplasmic reticulum signal peptide, a specific peptide sequence that acts as a signal to localize the protein within the endoplasmic reticulum.
|
6 | P20424 (/ISS) P20424 (/ISS) P20424 (/ISS) P20424 (/ISS) P20424 (/ISS) P20424 (/ISS) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
5 | Q385M8 (/ISA) Q385M8 (/ISA) Q385M8 (/ISA) Q385M8 (/ISA) Q8ISC7 (/ISA) |
GTPase activity GO:0003924
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
|
5 | Q385M8 (/ISM) Q385M8 (/ISM) Q385M8 (/ISM) Q385M8 (/ISM) Q8ISC7 (/ISM) |
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
|
5 | Q385M8 (/ISM) Q385M8 (/ISM) Q385M8 (/ISM) Q385M8 (/ISM) Q8ISC7 (/ISM) |
Protein domain specific binding GO:0019904
Interacting selectively and non-covalently with a specific domain of a protein.
|
2 | P37107 (/IPI) P37107 (/IPI) |
7S RNA binding GO:0008312
Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
|
1 | P21565 (/IPI) |
There are 8 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein targeting to membrane GO:0006612
The process of directing proteins towards a membrane, usually using signals contained within the protein.
|
155 |
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
(145 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
14 |
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
(4 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
7 | P20424 (/IMP) P20424 (/IMP) P20424 (/IMP) P20424 (/IMP) P20424 (/IMP) P20424 (/IMP) P21565 (/IMP) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
6 | P20424 (/IDA) P20424 (/IDA) P20424 (/IDA) P20424 (/IDA) P20424 (/IDA) P20424 (/IDA) |
Protein targeting GO:0006605
The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
|
5 | Q385M8 (/ISM) Q385M8 (/ISM) Q385M8 (/ISM) Q385M8 (/ISM) Q8ISC7 (/ISM) |
Protein secretion GO:0009306
The controlled release of proteins from a cell.
|
2 | Q7CWG2 (/ISA) Q7CWG2 (/ISA) |
Protein secretion GO:0009306
The controlled release of proteins from a cell.
|
2 | A0A0F7R7Z0 (/ISS) A0A0F7R7Z0 (/ISS) |
Protein heterotrimerization GO:0070208
The formation of a protein heterotrimer, a macromolecular structure consisting of three noncovalently associated subunits, of which not all are identical.
|
2 | P37107 (/IMP) P37107 (/IMP) |
There are 21 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
171 |
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
(161 more) |
Signal recognition particle GO:0048500
A complex of protein and RNA which facilitates translocation of proteins across membranes.
|
155 |
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
P0AGD7 (/IMP)
(145 more) |
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
|
155 |
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
P0AGD7 (/IDA)
(145 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
14 |
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
(4 more) |
Signal recognition particle, endoplasmic reticulum targeting GO:0005786
A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
|
14 |
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
Q8IKX4 (/RCA)
(4 more) |
Endoplasmic reticulum membrane GO:0005789
The lipid bilayer surrounding the endoplasmic reticulum.
|
14 |
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
Q8IKX4 (/IDA)
(4 more) |
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
10 | P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
10 | P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) P9WGD7 (/HDA) |
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
|
7 | P20424 (/HDA) P20424 (/HDA) P20424 (/HDA) P20424 (/HDA) P20424 (/HDA) P20424 (/HDA) P21565 (/HDA) |
Signal recognition particle, endoplasmic reticulum targeting GO:0005786
A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
|
6 | P20424 (/IDA) P20424 (/IDA) P20424 (/IDA) P20424 (/IDA) P20424 (/IDA) P20424 (/IDA) |
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
|
5 | Q385M8 (/IDA) Q385M8 (/IDA) Q385M8 (/IDA) Q385M8 (/IDA) Q8ISC7 (/IDA) |
Signal recognition particle, endoplasmic reticulum targeting GO:0005786
A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
|
5 | Q385M8 (/ISM) Q385M8 (/ISM) Q385M8 (/ISM) Q385M8 (/ISM) Q8ISC7 (/ISM) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
2 | P37106 (/ISS) P37106 (/ISS) |
Signal recognition particle, endoplasmic reticulum targeting GO:0005786
A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
|
2 | P37106 (/ISS) P37106 (/ISS) |
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
|
2 | P37107 (/IDA) P37107 (/IDA) |
Chloroplast stroma GO:0009570
The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
|
2 | P37107 (/IDA) P37107 (/IDA) |
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
2 | P37107 (/IDA) P37107 (/IDA) |
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
|
1 | Q4QAR0 (/ISO) |
Signal recognition particle, endoplasmic reticulum targeting GO:0005786
A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
|
1 | P21565 (/IPI) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | P21565 (/HDA) |
Phagocytic vesicle GO:0045335
A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
|
1 | Q75K18 (/HDA) |