CATH Superfamily 1.10.8.50
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: 30S ribosomal protein S13
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 8 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
178 |
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
(168 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
171 |
P0A7S9 (/IPI)
P0A7S9 (/IPI)
P0A7S9 (/IPI)
P0A7S9 (/IPI)
P0A7S9 (/IPI)
P0A7S9 (/IPI)
P0A7S9 (/IPI)
P0A7S9 (/IPI)
P0A7S9 (/IPI)
P0A7S9 (/IPI)
(161 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
15 |
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
(5 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
4 | Q38B69 (/ISM) Q38B69 (/ISM) Q38B69 (/ISM) Q38B69 (/ISM) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
4 | Q38B69 (/IDA) Q38B69 (/IDA) Q38B69 (/IDA) Q38B69 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
4 | Q38B69 (/ISM) Q38B69 (/ISM) Q38B69 (/ISM) Q38B69 (/ISM) |
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
|
4 | Q38B69 (/IPI) Q38B69 (/IPI) Q38B69 (/IPI) Q38B69 (/IPI) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
1 | O59772 (/ISO) |
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Ribosomal small subunit assembly GO:0000028
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.
|
171 |
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
(161 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
15 |
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
(5 more) |
Mitochondrial translation GO:0032543
The chemical reactions and pathways resulting in the formation of a protein in a mitochondrion. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein; the mitochondrion has its own ribosomes and transfer RNAs, and uses a genetic code that differs from the nuclear code.
|
7 | P53937 (/IC) P53937 (/IC) P53937 (/IC) P53937 (/IC) P53937 (/IC) P53937 (/IC) P53937 (/IC) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
4 | Q38B69 (/ISM) Q38B69 (/ISM) Q38B69 (/ISM) Q38B69 (/ISM) |
Mitochondrial translation GO:0032543
The chemical reactions and pathways resulting in the formation of a protein in a mitochondrion. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein; the mitochondrion has its own ribosomes and transfer RNAs, and uses a genetic code that differs from the nuclear code.
|
1 | O59772 (/ISO) |
There are 19 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
342 |
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
C3SR52 (/IDA)
(332 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
171 |
P0A7S9 (/IDA)
P0A7S9 (/IDA)
P0A7S9 (/IDA)
P0A7S9 (/IDA)
P0A7S9 (/IDA)
P0A7S9 (/IDA)
P0A7S9 (/IDA)
P0A7S9 (/IDA)
P0A7S9 (/IDA)
P0A7S9 (/IDA)
(161 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
15 |
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
Q9KP05 (/ISS)
(5 more) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
13 |
P9WH61 (/HDA)
P9WH61 (/HDA)
P9WH61 (/HDA)
P9WH61 (/HDA)
P9WH61 (/HDA)
P9WH61 (/HDA)
P9WH61 (/HDA)
P9WH61 (/HDA)
P9WH61 (/HDA)
P9WH61 (/HDA)
(3 more) |
Mitochondrial small ribosomal subunit GO:0005763
The smaller of the two subunits of a mitochondrial ribosome.
|
7 | P53937 (/IDA) P53937 (/IDA) P53937 (/IDA) P53937 (/IDA) P53937 (/IDA) P53937 (/IDA) P53937 (/IDA) |
Small ribosomal subunit GO:0015935
The smaller of the two subunits of a ribosome.
|
7 | P53937 (/ISS) P53937 (/ISS) P53937 (/ISS) P53937 (/ISS) P53937 (/ISS) P53937 (/ISS) P53937 (/ISS) |
Organellar small ribosomal subunit GO:0000314
The smaller of the two subunits of an organellar ribosome.
|
4 | Q38B69 (/ISM) Q38B69 (/ISM) Q38B69 (/ISM) Q38B69 (/ISM) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
4 | Q38B69 (/IDA) Q38B69 (/IDA) Q38B69 (/IDA) Q38B69 (/IDA) |
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
|
4 | Q38B69 (/ISM) Q38B69 (/ISM) Q38B69 (/ISM) Q38B69 (/ISM) |
Nuclear lumen GO:0031981
The volume enclosed by the nuclear inner membrane.
|
4 | Q38B69 (/IDA) Q38B69 (/IDA) Q38B69 (/IDA) Q38B69 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
2 | Q4Q1Y2 (/ISO) Q4Q1Y3 (/ISO) |
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
|
2 | Q9CA19 (/IDA) Q9CA19 (/IDA) |
Mitochondrial small ribosomal subunit GO:0005763
The smaller of the two subunits of a mitochondrial ribosome.
|
2 | Q9CA19 (/TAS) Q9CA19 (/TAS) |
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
|
2 | P42732 (/IDA) P42732 (/IDA) |
Chloroplast stroma GO:0009570
The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
|
2 | P42732 (/IDA) P42732 (/IDA) |
Chloroplast envelope GO:0009941
The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space.
|
2 | P42732 (/IDA) P42732 (/IDA) |
Nuclear lumen GO:0031981
The volume enclosed by the nuclear inner membrane.
|
2 | Q4Q1Y2 (/ISO) Q4Q1Y3 (/ISO) |
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
|
1 | O59772 (/HDA) |
Mitochondrial small ribosomal subunit GO:0005763
The smaller of the two subunits of a mitochondrial ribosome.
|
1 | O59772 (/ISO) |