The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Chlorophyll a/b binding protein domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: Chlorophyll a-b binding protein, chloroplastic

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 3 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
11 P07371 (/IPI) P0CJ48 (/IPI) P0CJ48 (/IPI) P0CJ48 (/IPI) P27490 (/IPI) Q39141 (/IPI) Q39141 (/IPI) Q9S7M0 (/IPI) Q9S7M0 (/IPI) Q9XF87 (/IPI)
(1 more)
Chlorophyll binding GO:0016168
Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
8 P04778 (/TAS) P04778 (/TAS) P0CJ48 (/TAS) P0CJ48 (/TAS) P0CJ48 (/TAS) Q8VZ87 (/TAS) Q8VZ87 (/TAS) Q8VZ87 (/TAS)
Protein domain specific binding GO:0019904
Interacting selectively and non-covalently with a specific domain of a protein.
8 P04778 (/IPI) P04778 (/IPI) Q39141 (/IPI) Q39141 (/IPI) Q39142 (/IPI) Q9S7M0 (/IPI) Q9S7M0 (/IPI) Q9SHR7 (/IPI)

There are 29 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Photosynthesis GO:0015979
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
12 P12330 (/ISS) P12330 (/ISS) P12330 (/ISS) P12330 (/ISS) P12330 (/ISS) P12330 (/ISS) P12331 (/ISS) P12331 (/ISS) P12331 (/ISS) P12331 (/ISS)
(2 more)
Response to blue light GO:0009637
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.
6 P0CJ48 (/IEP) P0CJ48 (/IEP) P0CJ48 (/IEP) Q9SHR7 (/IEP) Q9XF87 (/IEP) Q9XF87 (/IEP)
Response to high light intensity GO:0009644
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus.
6 Q9S7J7 (/IEP) Q9S7M0 (/IEP) Q9S7M0 (/IEP) Q9SHR7 (/IEP) Q9XF87 (/IEP) Q9XF87 (/IEP)
Response to red light GO:0010114
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
6 P0CJ48 (/IEP) P0CJ48 (/IEP) P0CJ48 (/IEP) Q9SHR7 (/IEP) Q9XF87 (/IEP) Q9XF87 (/IEP)
Response to far red light GO:0010218
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
6 P0CJ48 (/IEP) P0CJ48 (/IEP) P0CJ48 (/IEP) Q9SHR7 (/IEP) Q9XF87 (/IEP) Q9XF87 (/IEP)
Response to desiccation GO:0009269
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water.
4 Q9S7J7 (/IEP) Q9SHR7 (/IEP) Q9XF87 (/IEP) Q9XF87 (/IEP)
Response to cold GO:0009409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
4 Q9S7J7 (/IEP) Q9SHR7 (/IEP) Q9XF87 (/IEP) Q9XF87 (/IEP)
Response to light stimulus GO:0009416
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
4 Q9S7J7 (/IDA) Q9SHR7 (/IDA) Q9XF87 (/IDA) Q9XF87 (/IDA)
Response to low light intensity stimulus GO:0009645
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low light intensity stimulus. Low light intensity is defined as a level of electromagnetic radiation at or below 0.1 micromols/m2.
4 Q9S7J7 (/IEP) Q9SHR7 (/IEP) Q9XF87 (/IEP) Q9XF87 (/IEP)
Photosynthesis, light harvesting in photosystem I GO:0009768
After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem I, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center.
4 Q9S7J7 (/IDA) Q9SHR7 (/IDA) Q9XF87 (/IDA) Q9XF87 (/IDA)
Photosynthesis, light harvesting in photosystem II GO:0009769
After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem II, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center.
4 Q9S7J7 (/IDA) Q9SHR7 (/IDA) Q9XF87 (/IDA) Q9XF87 (/IDA)
Response to red light GO:0010114
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
4 Q9S7J7 (/IDA) Q9SHR7 (/IDA) Q9XF87 (/IDA) Q9XF87 (/IDA)
Response to far red light GO:0010218
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
4 Q9S7J7 (/IDA) Q9SHR7 (/IDA) Q9XF87 (/IDA) Q9XF87 (/IDA)
Response to fructose GO:0009750
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus.
3 P0CJ48 (/IEP) P0CJ48 (/IEP) P0CJ48 (/IEP)
Photosynthesis, light harvesting in photosystem II GO:0009769
After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem II, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center.
3 Q9S7M0 (/IMP) Q9S7M0 (/IMP) Q9SHR7 (/IMP)
Water homeostasis GO:0030104
Any process involved in the maintenance of an internal steady state of water within an organism or cell.
3 Q9SHR7 (/ISS) Q9XF87 (/ISS) Q9XF87 (/ISS)
Cellular response to abscisic acid stimulus GO:0071215
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
3 Q9SHR7 (/ISS) Q9XF87 (/ISS) Q9XF87 (/ISS)
Regulation of stomatal closure GO:0090333
Any process that modulates the rate, frequency, or extent of stomatal closure. Stomatal closure is the process of closing of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange.
3 Q9SHR7 (/ISS) Q9XF87 (/ISS) Q9XF87 (/ISS)
Positive regulation of reactive oxygen species biosynthetic process GO:1903428
Any process that activates or increases the frequency, rate or extent of reactive oxygen species biosynthetic process.
3 Q9SHR7 (/ISS) Q9XF87 (/ISS) Q9XF87 (/ISS)
Response to herbicide GO:0009635
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a herbicide stimulus. Herbicides are chemicals used to kill or control the growth of plants.
2 Q9S7M0 (/IEP) Q9S7M0 (/IEP)
Response to abscisic acid GO:0009737
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
2 Q9S7M0 (/IMP) Q9S7M0 (/IMP)
Regulation of stomatal movement GO:0010119
Any process that modulates the frequency, rate or extent of stomatal movement.
2 Q9S7M0 (/IMP) Q9S7M0 (/IMP)
Photosynthesis GO:0015979
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
2 Q9S7M0 (/IMP) Q9S7M0 (/IMP)
Photosynthesis, light harvesting in photosystem I GO:0009768
After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem I, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center.
1 Q9SHR7 (/IMP)
Response to red light GO:0010114
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
1 Q9SHR7 (/IMP)
Water homeostasis GO:0030104
Any process involved in the maintenance of an internal steady state of water within an organism or cell.
1 Q9S7J7 (/IMP)
Cellular response to abscisic acid stimulus GO:0071215
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
1 Q9S7J7 (/IMP)
Regulation of stomatal closure GO:0090333
Any process that modulates the rate, frequency, or extent of stomatal closure. Stomatal closure is the process of closing of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange.
1 Q9S7J7 (/IMP)
Positive regulation of reactive oxygen species biosynthetic process GO:1903428
Any process that activates or increases the frequency, rate or extent of reactive oxygen species biosynthetic process.
1 Q9S7J7 (/IMP)

There are 16 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Chloroplast thylakoid membrane GO:0009535
The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
17 P04778 (/IDA) P04778 (/IDA) P0CJ48 (/IDA) P0CJ48 (/IDA) P0CJ48 (/IDA) Q39141 (/IDA) Q39141 (/IDA) Q39142 (/IDA) Q8VZ87 (/IDA) Q8VZ87 (/IDA)
(7 more)
Thylakoid GO:0009579
A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
17 P04778 (/IDA) P04778 (/IDA) P0CJ48 (/IDA) P0CJ48 (/IDA) P0CJ48 (/IDA) Q39141 (/IDA) Q39141 (/IDA) Q39142 (/IDA) Q8VZ87 (/IDA) Q8VZ87 (/IDA)
(7 more)
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
15 P04778 (/IDA) P04778 (/IDA) P0CJ48 (/IDA) P0CJ48 (/IDA) P0CJ48 (/IDA) Q39141 (/IDA) Q39141 (/IDA) Q39142 (/IDA) Q8VZ87 (/IDA) Q8VZ87 (/IDA)
(5 more)
Chloroplast thylakoid membrane GO:0009535
The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
12 P12330 (/ISS) P12330 (/ISS) P12330 (/ISS) P12330 (/ISS) P12330 (/ISS) P12330 (/ISS) P12331 (/ISS) P12331 (/ISS) P12331 (/ISS) P12331 (/ISS)
(2 more)
Chloroplast thylakoid GO:0009534
Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana.
11 P04778 (/IDA) P04778 (/IDA) Q39141 (/IDA) Q39141 (/IDA) Q39142 (/IDA) Q8VZ87 (/IDA) Q8VZ87 (/IDA) Q8VZ87 (/IDA) Q9S7J7 (/IDA) Q9S7M0 (/IDA)
(1 more)
Plastoglobule GO:0010287
A lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids.
8 Q39141 (/IDA) Q39141 (/IDA) Q39142 (/IDA) Q8VZ87 (/IDA) Q8VZ87 (/IDA) Q8VZ87 (/IDA) Q9S7J7 (/IDA) Q9SHR7 (/IDA)
PSII associated light-harvesting complex II GO:0009517
Protein-pigment complex associated with photosystem II.
6 Q9S7J7 (/IDA) Q9S7M0 (/IDA) Q9S7M0 (/IDA) Q9SHR7 (/IDA) Q9XF87 (/IDA) Q9XF87 (/IDA)
Chloroplast envelope GO:0009941
The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space.
5 Q39142 (/IDA) Q9S7J7 (/IDA) Q9SHR7 (/IDA) Q9XF87 (/IDA) Q9XF87 (/IDA)
Photosystem I GO:0009522
A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
4 Q9S7J7 (/IDA) Q9SHR7 (/IDA) Q9XF87 (/IDA) Q9XF87 (/IDA)
Photosystem II GO:0009523
A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
4 Q9S7J7 (/IDA) Q9SHR7 (/IDA) Q9XF87 (/IDA) Q9XF87 (/IDA)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
4 Q39141 (/IDA) Q39141 (/IDA) Q39142 (/IDA) Q9SHR7 (/IDA)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
3 Q8VZ87 (/IDA) Q8VZ87 (/IDA) Q8VZ87 (/IDA)
Apoplast GO:0048046
The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
3 P0CJ48 (/IDA) P0CJ48 (/IDA) P0CJ48 (/IDA)
Thylakoid membrane GO:0042651
The pigmented membrane of any thylakoid.
2 Q9S7M0 (/IDA) Q9S7M0 (/IDA)
Vacuolar membrane GO:0005774
The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell.
1 Q9S7J7 (/IDA)
PSII associated light-harvesting complex II GO:0009517
Protein-pigment complex associated with photosystem II.
1 Q9SHR7 (/IMP)
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