The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"High mobility group box domain
".
FunFam 65: Nhp10p
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 3 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Heteroduplex DNA loop binding GO:0000404
Interacting selectively and non-covalently with DNA containing a loop. A loop occurs when DNA contains a large insertion or deletion that causes a region of unpaired single-stranded DNA to loop out, while the rest of the DNA is in a paired double-stranded configuration.
|
8 | Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
8 | Q03435 (/IPI) Q03435 (/IPI) Q03435 (/IPI) Q03435 (/IPI) Q03435 (/IPI) Q03435 (/IPI) Q03435 (/IPI) Q03435 (/IPI) |
|
DNA end binding GO:0045027
Interacting selectively and non-covalently with the ends of DNA that are exposed by the creation of double-strand breaks (DSBs).
|
8 | Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) |
There are 4 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Telomere maintenance via recombination GO:0000722
Any recombinational process that contributes to the maintenance of proper telomeric length.
|
8 | Q03435 (/IGI) Q03435 (/IGI) Q03435 (/IGI) Q03435 (/IGI) Q03435 (/IGI) Q03435 (/IGI) Q03435 (/IGI) Q03435 (/IGI) |
|
Double-strand break repair GO:0006302
The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.
|
8 | Q03435 (/IGI) Q03435 (/IGI) Q03435 (/IGI) Q03435 (/IGI) Q03435 (/IGI) Q03435 (/IGI) Q03435 (/IGI) Q03435 (/IGI) |
|
Double-strand break repair GO:0006302
The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.
|
8 | Q03435 (/IMP) Q03435 (/IMP) Q03435 (/IMP) Q03435 (/IMP) Q03435 (/IMP) Q03435 (/IMP) Q03435 (/IMP) Q03435 (/IMP) |
|
Nucleosome mobilization GO:0042766
The movement of nucleosomes along a DNA fragment.
|
8 | Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) |
There are 3 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
8 | Q03435 (/HDA) Q03435 (/HDA) Q03435 (/HDA) Q03435 (/HDA) Q03435 (/HDA) Q03435 (/HDA) Q03435 (/HDA) Q03435 (/HDA) |
|
Ino80 complex GO:0031011
A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.
|
8 | Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) Q03435 (/IDA) |
|
Ino80 complex GO:0031011
A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.
|
8 | Q03435 (/IPI) Q03435 (/IPI) Q03435 (/IPI) Q03435 (/IPI) Q03435 (/IPI) Q03435 (/IPI) Q03435 (/IPI) Q03435 (/IPI) |