The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"High mobility group box domain
".
FunFam 40: SRY (sex determining region Y)-box 32
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 4 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
4 | A0A0R4IRI6 (/IDA) Q90Y79 (/IDA) Q90YM6 (/IDA) Q90Z46 (/IDA) |
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
4 | A0A0R4IRI6 (/IDA) Q90Y79 (/IDA) Q90YM6 (/IDA) Q90Z46 (/IDA) |
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
4 | A0A0R4IRI6 (/IGI) Q90Y79 (/IGI) Q90YM6 (/IGI) Q90Z46 (/IGI) |
Protein heterodimerization activity GO:0046982
Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
|
4 | A0A0R4IRI6 (/IPI) Q90Y79 (/IPI) Q90YM6 (/IPI) Q90Z46 (/IPI) |
There are 24 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Endoderm formation GO:0001706
The formation of the endoderm during gastrulation.
|
4 | A0A0R4IRI6 (/IDA) Q90Y79 (/IDA) Q90YM6 (/IDA) Q90Z46 (/IDA) |
Endoderm formation GO:0001706
The formation of the endoderm during gastrulation.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Endothelial cell development GO:0001885
The progression of an endothelial cell over time, from its formation to the mature structure.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Liver development GO:0001889
The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes.
|
4 | A0A0R4IRI6 (/IGI) Q90Y79 (/IGI) Q90YM6 (/IGI) Q90Z46 (/IGI) |
Liver development GO:0001889
The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Lymphangiogenesis GO:0001946
Lymph vessel formation when new vessels emerge from the proliferation of pre-existing vessels.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Heart morphogenesis GO:0003007
The developmental process in which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Endocardial progenitor cell migration to the midline involved in heart field formation GO:0003262
The orderly movement of an endocardial progenitor cell toward the midline to form the heart field. Cardiac muscle progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into endocardial cells of the heart.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Determination of left/right symmetry GO:0007368
The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Endoderm development GO:0007492
The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Endodermal cell fate determination GO:0007493
The cell fate determination process in which a cell becomes capable of differentiating autonomously into an endoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Mesoderm development GO:0007498
The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue.
|
4 | A0A0R4IRI6 (/IDA) Q90Y79 (/IDA) Q90YM6 (/IDA) Q90Z46 (/IDA) |
Regulation of gene expression GO:0010468
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Embryonic heart tube development GO:0035050
The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure. The heart tube forms as the heart rudiment from the heart field.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Hematopoietic stem cell migration GO:0035701
The orderly movement of a hematopoietic stem cell from one site to another. A hematopoietic stem cell is a cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Cell migration involved in gastrulation GO:0042074
The migration of individual cells within the blastocyst to help establish the multi-layered body plan of the organism (gastrulation). For example, the migration of cells from the surface to the interior of the embryo (ingression).
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Regulation of endodermal cell fate specification GO:0042663
Any process that mediates the specification of a cell into an endoderm cell.
|
4 | A0A0R4IRI6 (/IDA) Q90Y79 (/IDA) Q90YM6 (/IDA) Q90Z46 (/IDA) |
Regulation of endodermal cell fate specification GO:0042663
Any process that mediates the specification of a cell into an endoderm cell.
|
4 | A0A0R4IRI6 (/IGI) Q90Y79 (/IGI) Q90YM6 (/IGI) Q90Z46 (/IGI) |
Blood vessel endothelial cell migration GO:0043534
The orderly movement of an endothelial cell into the extracellular matrix in order to form new blood vessels during angiogenesis.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
4 | A0A0R4IRI6 (/IDA) Q90Y79 (/IDA) Q90YM6 (/IDA) Q90Z46 (/IDA) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
4 | A0A0R4IRI6 (/IGI) Q90Y79 (/IGI) Q90YM6 (/IGI) Q90Z46 (/IGI) |
Definitive hemopoiesis GO:0060216
A second wave of blood cell production that, in vertebrates, generates long-term hemopoietic stem cells that continously provide erythroid, myeloid and lymphoid lineages throughout adulthood.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
Regulation of cartilage development GO:0061035
Any process that modulates the rate, frequency, or extent of cartilage development, the process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
|
4 | A0A0R4IRI6 (/IGI) Q90Y79 (/IGI) Q90YM6 (/IGI) Q90Z46 (/IGI) |
Regulation of cartilage development GO:0061035
Any process that modulates the rate, frequency, or extent of cartilage development, the process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
|
4 | A0A0R4IRI6 (/IMP) Q90Y79 (/IMP) Q90YM6 (/IMP) Q90Z46 (/IMP) |
There are 1 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | A0A0R4IRI6 (/IC) Q90Y79 (/IC) Q90YM6 (/IC) Q90Z46 (/IC) |