The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
High mobility group box domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 13: High mobility group protein B3

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 14 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Four-way junction DNA binding GO:0000400
Interacting selectively and non-covalently with DNA containing four-way junctions, also known as Holliday junctions, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices.
1123 A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS)
(1113 more)
DNA binding, bending GO:0008301
The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
1121 A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS)
(1111 more)
DNA binding, bending GO:0008301
The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
71 A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA)
(61 more)
Four-way junction DNA binding GO:0000400
Interacting selectively and non-covalently with DNA containing four-way junctions, also known as Holliday junctions, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices.
68 A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA)
(58 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
7 O15347 (/IPI) O15347 (/IPI) O15347 (/IPI) O15347 (/IPI) O15347 (/IPI) O15347 (/IPI) Q24537 (/IPI)
Double-stranded DNA binding GO:0003690
Interacting selectively and non-covalently with double-stranded DNA.
6 O15347 (/ISS) O15347 (/ISS) O15347 (/ISS) O15347 (/ISS) O15347 (/ISS) O15347 (/ISS)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
6 O15347 (/HDA) O15347 (/HDA) O15347 (/HDA) O15347 (/HDA) O15347 (/HDA) O15347 (/HDA)
DNA binding, bending GO:0008301
The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
6 O15347 (/TAS) O15347 (/TAS) O15347 (/TAS) O15347 (/TAS) O15347 (/TAS) O15347 (/TAS)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
3 O54879 (/IDA) O54879 (/IDA) Q24537 (/IDA)
Double-stranded DNA binding GO:0003690
Interacting selectively and non-covalently with double-stranded DNA.
2 Q32L31 (/IDA) Q32L31 (/IDA)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
2 O54879 (/IDA) O54879 (/IDA)
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
1 Q24537 (/NAS)
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
1 Q24537 (/IPI)
TBP-class protein binding GO:0017025
Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).
1 Q24537 (/IPI)

There are 19 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA geometric change GO:0032392
The process in which a transformation is induced in the geometry of a DNA double helix, resulting in a change in twist, writhe, or both, but with no change in linking number. Includes the unwinding of double-stranded DNA by helicases.
1123 A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS) A0A087QUH1 (/ISS)
(1113 more)
DNA geometric change GO:0032392
The process in which a transformation is induced in the geometry of a DNA double helix, resulting in a change in twist, writhe, or both, but with no change in linking number. Includes the unwinding of double-stranded DNA by helicases.
68 A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA) A0A0A0MQ46 (/IDA)
(58 more)
DNA recombination GO:0006310
Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
6 O15347 (/ISS) O15347 (/ISS) O15347 (/ISS) O15347 (/ISS) O15347 (/ISS) O15347 (/ISS)
Multicellular organism development GO:0007275
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
6 O15347 (/TAS) O15347 (/TAS) O15347 (/TAS) O15347 (/TAS) O15347 (/TAS) O15347 (/TAS)
DNA recombination GO:0006310
Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
2 Q32L31 (/IDA) Q32L31 (/IDA)
Negative regulation of B cell differentiation GO:0045578
Any process that stops, prevents, or reduces the frequency, rate or extent of B cell differentiation.
2 O54879 (/IDA) O54879 (/IDA)
Negative regulation of myeloid cell differentiation GO:0045638
Any process that stops, prevents, or reduces the frequency, rate or extent of myeloid cell differentiation.
2 O54879 (/IDA) O54879 (/IDA)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
1 Q24537 (/IDA)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
1 Q24537 (/IMP)
DNA unwinding involved in DNA replication GO:0006268
The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication.
1 Q24537 (/NAS)
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
1 Q24537 (/IMP)
Segment specification GO:0007379
The process in which segments assume individual identities; exemplified in insects by the actions of the products of the homeotic genes.
1 Q24537 (/IMP)
Negative regulation of antimicrobial humoral response GO:0008348
Any process that stops, prevents, or reduces the frequency, rate, or extent of an antimicrobial humoral response.
1 Q24537 (/IGI)
Negative regulation of antimicrobial humoral response GO:0008348
Any process that stops, prevents, or reduces the frequency, rate, or extent of an antimicrobial humoral response.
1 Q24537 (/IMP)
Negative regulation of RNA polymerase II transcriptional preinitiation complex assembly GO:0017055
Any process that stops, prevents, or reduces the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly.
1 Q24537 (/IDA)
Developmental process GO:0032502
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
1 Q24537 (/IMP)
Leg disc development GO:0035218
Progression of the leg imaginal disc over time, from its initial formation through to its metamorphosis to form adult structures including the leg, coxa and ventral thoracic pleura.
1 Q24537 (/IMP)
Positive regulation of DNA binding GO:0043388
Any process that increases the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid).
1 Q24537 (/IDA)
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
1 Q24537 (/IDA)

There are 5 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
3 O54879 (/IDA) O54879 (/IDA) Q24537 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q24537 (/HDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q24537 (/NAS)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
1 Q24537 (/TAS)
Polytene chromosome GO:0005700
A type of chromosome in a polyploid cell, formed when multiple copies of homologous chromosomes are aligned side by side to give a giant chromosome in which distinct chromosome bands are readily visible.
1 Q24537 (/IDA)