The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"High mobility group box domain
".
FunFam 11: Putative SWI/SNF-related matrix-associated actin-d...
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 12 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
12 |
O54941 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
(2 more) |
Protein N-terminus binding GO:0047485
Interacting selectively and non-covalently with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
|
12 |
Q56A18 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
(2 more) |
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
11 |
Q969G3 (/ISA)
Q969G3 (/ISA)
Q969G3 (/ISA)
Q969G3 (/ISA)
Q969G3 (/ISA)
Q969G3 (/ISA)
Q969G3 (/ISA)
Q969G3 (/ISA)
Q969G3 (/ISA)
Q969G3 (/ISA)
(1 more) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
11 |
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
(1 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
11 |
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
(1 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
11 |
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
(1 more) |
N-acetyltransferase activity GO:0008080
Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
|
11 |
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
(1 more) |
Nuclear receptor binding GO:0016922
Interacting selectively and non-covalently, in a ligand dependent manner, with a nuclear receptor protein.
|
11 |
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
Q969G3 (/IPI)
(1 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
1 | O54941 (/IDA) |
N-acetyltransferase activity GO:0008080
Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
|
1 | O54941 (/ISO) |
Nuclear receptor binding GO:0016922
Interacting selectively and non-covalently, in a ligand dependent manner, with a nuclear receptor protein.
|
1 | O54941 (/ISO) |
Protein N-terminus binding GO:0047485
Interacting selectively and non-covalently with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
|
1 | O54941 (/ISO) |
There are 15 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleosome disassembly GO:0006337
The controlled breakdown of nucleosomes, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
|
11 |
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
(1 more) |
Nucleosome disassembly GO:0006337
The controlled breakdown of nucleosomes, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
|
11 |
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
(1 more) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
11 |
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
(1 more) |
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
11 |
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
Q969G3 (/NAS)
(1 more) |
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
11 |
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
(1 more) |
ATP-dependent chromatin remodeling GO:0043044
Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors.
|
11 |
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
(1 more) |
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
11 |
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
(1 more) |
Endocardium morphogenesis GO:0003160
The process in which the anatomical structure of the endocardium is generated and organized. The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers.
|
2 | F1Q5P8 (/IMP) Q803S1 (/IMP) |
Nucleosome disassembly GO:0006337
The controlled breakdown of nucleosomes, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
|
1 | O54941 (/ISO) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
1 | O54941 (/ISO) |
Spermatid development GO:0007286
The process whose specific outcome is the progression of a spermatid over time, from its formation to the mature structure.
|
1 | Q56A18 (/IEP) |
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
|
1 | Q56A18 (/IEP) |
Neurogenesis GO:0022008
Generation of cells within the nervous system.
|
1 | O54941 (/IGI) |
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
1 | Q56A18 (/IMP) |
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
1 | O54941 (/ISO) |
There are 13 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
26 |
A0A024R1S7 (/IDA)
A0A024R1S7 (/IDA)
A0A024R1S7 (/IDA)
A0A024R1S7 (/IDA)
A0A024R1S7 (/IDA)
A0A024R1S7 (/IDA)
A0A024R1S7 (/IDA)
A0A024R1S7 (/IDA)
A0A024R1S7 (/IDA)
A0A024R1S7 (/IDA)
(16 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
12 |
Q56A18 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
(2 more) |
SWI/SNF complex GO:0016514
A SWI/SNF-type complex that contains 8 to 14 proteins, including both conserved (core) and nonconserved components; contains the ATPase product of the yeast SNF2 or mammalian SMARCA4/BAF190A/BRG1 gene, or an ortholog thereof.
|
12 |
O54941 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
Q969G3 (/IDA)
(2 more) |
Nuclear chromosome GO:0000228
A chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact.
|
11 |
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
Q969G3 (/TAS)
(1 more) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
11 |
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
(1 more) |
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
11 |
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
Q969G3 (/HDA)
(1 more) |
NpBAF complex GO:0071564
A SWI/SNF-type complex that is found in neural stem or progenitor cells, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A/BAF53A genes. The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells.
|
11 |
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
(1 more) |
NBAF complex GO:0071565
A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.
|
11 |
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
Q969G3 (/ISS)
(1 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O54941 (/ISO) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
1 | O54941 (/ISO) |
SWI/SNF complex GO:0016514
A SWI/SNF-type complex that contains 8 to 14 proteins, including both conserved (core) and nonconserved components; contains the ATPase product of the yeast SNF2 or mammalian SMARCA4/BAF190A/BRG1 gene, or an ortholog thereof.
|
1 | O54941 (/ISO) |
NpBAF complex GO:0071564
A SWI/SNF-type complex that is found in neural stem or progenitor cells, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A/BAF53A genes. The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells.
|
1 | O54941 (/IDA) |
NBAF complex GO:0071565
A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.
|
1 | O54941 (/IDA) |