The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"lambda repressor-like DNA-binding domains
".
FunFam 15: Endothelial differentiation-related factor 1
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 10 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
TFIID-class transcription factor complex binding GO:0001094
Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIID complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
|
22 |
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
(12 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
22 |
O60869 (/IMP)
O60869 (/IMP)
O60869 (/IMP)
O60869 (/IMP)
O60869 (/IMP)
O60869 (/IMP)
O60869 (/IMP)
O60869 (/IMP)
O60869 (/IMP)
O60869 (/IMP)
(12 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
22 |
O60869 (/HDA)
O60869 (/HDA)
O60869 (/HDA)
O60869 (/HDA)
O60869 (/HDA)
O60869 (/HDA)
O60869 (/HDA)
O60869 (/HDA)
O60869 (/HDA)
O60869 (/HDA)
(12 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
22 |
O60869 (/IPI)
O60869 (/IPI)
O60869 (/IPI)
O60869 (/IPI)
O60869 (/IPI)
O60869 (/IPI)
O60869 (/IPI)
O60869 (/IPI)
O60869 (/IPI)
O60869 (/IPI)
(12 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
12 |
M9PFR6 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
Q9XZ03 (/IDA)
(2 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
6 | O94700 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) |
TFIID-class transcription factor complex binding GO:0001094
Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIID complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
|
5 | Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) |
Protein binding, bridging GO:0030674
The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
|
4 | M9PFR6 (/IPI) Q9XZ03 (/IPI) Q9XZ03 (/IPI) Q9XZ03 (/IPI) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
1 | O94700 (/ISM) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
1 | M9PFR6 (/IDA) |
There are 16 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
22 |
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
(12 more) |
Multicellular organism development GO:0007275
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
|
22 |
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
(12 more) |
Regulation of lipid metabolic process GO:0019216
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids.
|
22 |
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
(12 more) |
Positive regulation of DNA binding GO:0043388
Any process that increases the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid).
|
22 |
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
(12 more) |
Endothelial cell differentiation GO:0045446
The process in which a mesodermal, bone marrow or neural crest cell acquires specialized features of an endothelial cell, a thin flattened cell. A layer of such cells lines the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium.
|
22 |
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
(12 more) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
22 |
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
(12 more) |
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
12 |
M9PFR6 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
O14467 (/IDA)
Q9XZ03 (/IDA)
(2 more) |
Positive regulation of DNA binding GO:0043388
Any process that increases the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid).
|
5 | Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) |
Central nervous system development GO:0007417
The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
|
4 | M9PFR6 (/IGI) Q9XZ03 (/IGI) Q9XZ03 (/IGI) Q9XZ03 (/IGI) |
Central nervous system development GO:0007417
The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
|
4 | M9PFR6 (/IMP) Q9XZ03 (/IMP) Q9XZ03 (/IMP) Q9XZ03 (/IMP) |
Open tracheal system development GO:0007424
The process whose specific outcome is the progression of an open tracheal system over time, from its formation to the mature structure. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster.
|
4 | M9PFR6 (/IGI) Q9XZ03 (/IGI) Q9XZ03 (/IGI) Q9XZ03 (/IGI) |
Open tracheal system development GO:0007424
The process whose specific outcome is the progression of an open tracheal system over time, from its formation to the mature structure. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster.
|
4 | M9PFR6 (/IMP) Q9XZ03 (/IMP) Q9XZ03 (/IMP) Q9XZ03 (/IMP) |
Pathogenesis GO:0009405
The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
|
2 | Q5A940 (/IMP) Q5A940 (/IMP) |
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
1 | O94700 (/ISO) |
MRNA stabilization GO:0048255
Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules.
|
1 | M9PFR6 (/IDA) |
Maintenance of translational fidelity GO:1990145
Suppression of the occurrence of translational errors, such as codon-anticodon mis-paring, during the process of translation of a protein using an mRNA template.
|
1 | O94700 (/TAS) |
There are 15 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
26 |
M9PFR6 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
(16 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
26 |
M9PFR6 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
(16 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
23 |
M9PFR6 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
(13 more) |
Intracellular GO:0005622
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
|
22 |
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
O60869 (/TAS)
(12 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
22 |
O60869 (/NAS)
O60869 (/NAS)
O60869 (/NAS)
O60869 (/NAS)
O60869 (/NAS)
O60869 (/NAS)
O60869 (/NAS)
O60869 (/NAS)
O60869 (/NAS)
O60869 (/NAS)
(12 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
22 |
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
O60869 (/IDA)
(12 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
8 | O14467 (/IC) O14467 (/IC) O14467 (/IC) O14467 (/IC) O14467 (/IC) O14467 (/IC) O14467 (/IC) O14467 (/IC) |
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
|
8 | O14467 (/HDA) O14467 (/HDA) O14467 (/HDA) O14467 (/HDA) O14467 (/HDA) O14467 (/HDA) O14467 (/HDA) O14467 (/HDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
5 | Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
5 | Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
5 | Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
5 | Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) Q9JMG1 (/ISO) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O94700 (/HDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
1 | O94700 (/HDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | O94700 (/HDA) |