The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Autophagy protein Apg5, helix rich domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 1: Autophagy related 5

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 1 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
13 A9UGY9 (/IPI) A9UGY9 (/IPI) A9UGY9 (/IPI) A9UGY9 (/IPI) A9UGY9 (/IPI) Q3MQ06 (/IPI) Q99J83 (/IPI) Q9H1Y0 (/IPI) Q9H1Y0 (/IPI) Q9H1Y0 (/IPI)
(3 more)

There are 52 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Autophagy GO:0006914
The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
15 Q3MQ04 (/ISS) Q3MQ06 (/ISS) Q3MQ24 (/ISS) Q3MQ24 (/ISS) Q3MQ24 (/ISS) Q3MQ24 (/ISS) Q5R792 (/ISS) Q5R792 (/ISS) Q99J83 (/ISS) Q9H1Y0 (/ISS)
(5 more)
Autophagy GO:0006914
The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
13 F1RDC0 (/IMP) F5ATB3 (/IMP) Q3MQ06 (/IMP) Q3V5I7 (/IMP) Q6DEM4 (/IMP) Q6TH46 (/IMP) Q99J83 (/IMP) Q9H1Y0 (/IMP) Q9H1Y0 (/IMP) Q9H1Y0 (/IMP)
(3 more)
Regulation of cilium assembly GO:1902017
Any process that modulates the frequency, rate or extent of cilium assembly.
11 Q3MQ04 (/ISS) Q3MQ06 (/ISS) Q3MQ24 (/ISS) Q3MQ24 (/ISS) Q3MQ24 (/ISS) Q3MQ24 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS)
(1 more)
Autophagosome assembly GO:0000045
The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.
6 F1RDC0 (/IMP) F5ATB3 (/IMP) Q3MQ06 (/IMP) Q6DEM4 (/IMP) Q6TH46 (/IMP) Q99J83 (/IMP)
Aggrephagy GO:0035973
Selective degradation of protein aggregates by macroautophagy.
6 Q99J83 (/IMP) Q9H1Y0 (/IMP) Q9H1Y0 (/IMP) Q9H1Y0 (/IMP) Q9H1Y0 (/IMP) Q9H1Y0 (/IMP)
Autophagosome assembly GO:0000045
The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.
5 Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS)
Macroautophagy GO:0016236
The major inducible pathway for the general turnover of cytoplasmic constituents in eukaryotic cells, it is also responsible for the degradation of active cytoplasmic enzymes and organelles during nutrient starvation. Macroautophagy involves the formation of double-membrane-bounded autophagosomes which enclose the cytoplasmic constituent targeted for degradation in a membrane-bounded structure. Autophagosomes then fuse with a lysosome (or vacuole) releasing single-membrane-bounded autophagic bodies that are then degraded within the lysosome (or vacuole). Some types of macroautophagy, e.g. pexophagy, mitophagy, involve selective targeting of the targets to be degraded.
5 Q9H1Y0 (/TAS) Q9H1Y0 (/TAS) Q9H1Y0 (/TAS) Q9H1Y0 (/TAS) Q9H1Y0 (/TAS)
Post-translational protein modification GO:0043687
The process of covalently altering one or more amino acids in a protein after the protein has been completely translated and released from the ribosome.
5 Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS)
Negative regulation of cell death GO:0060548
Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
5 Q9H1Y0 (/IMP) Q9H1Y0 (/IMP) Q9H1Y0 (/IMP) Q9H1Y0 (/IMP) Q9H1Y0 (/IMP)
Positive regulation by symbiont of host autophagy GO:0075044
Any process in which a symbiont organism increases the frequency, rate or extent of autophagy in the host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction.
5 Q9H1Y0 (/IGI) Q9H1Y0 (/IGI) Q9H1Y0 (/IGI) Q9H1Y0 (/IGI) Q9H1Y0 (/IGI)
Nervous system development GO:0007399
The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
4 F1RDC0 (/IMP) F5ATB3 (/IMP) Q6DEM4 (/IMP) Q6TH46 (/IMP)
Heart development GO:0007507
The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
4 F1RDC0 (/IMP) F5ATB3 (/IMP) Q6DEM4 (/IMP) Q6TH46 (/IMP)
Regulation of skeletal muscle tissue regeneration GO:0043416
Any process that modulates the frequency, rate or extent of skeletal muscle.
4 F1RDC0 (/IMP) F5ATB3 (/IMP) Q6DEM4 (/IMP) Q6TH46 (/IMP)
Cellular response to starvation GO:0009267
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment.
2 Q99J83 (/IMP) Q9W3R7 (/IMP)
Macroautophagy GO:0016236
The major inducible pathway for the general turnover of cytoplasmic constituents in eukaryotic cells, it is also responsible for the degradation of active cytoplasmic enzymes and organelles during nutrient starvation. Macroautophagy involves the formation of double-membrane-bounded autophagosomes which enclose the cytoplasmic constituent targeted for degradation in a membrane-bounded structure. Autophagosomes then fuse with a lysosome (or vacuole) releasing single-membrane-bounded autophagic bodies that are then degraded within the lysosome (or vacuole). Some types of macroautophagy, e.g. pexophagy, mitophagy, involve selective targeting of the targets to be degraded.
2 Q99J83 (/IMP) Q9W3R7 (/IMP)
Negative regulation of apoptotic process GO:0043066
Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
2 Q3MQ06 (/IMP) Q99J83 (/IMP)
Autophagy of mitochondrion GO:0000422
The autophagic process in which mitochondria are delivered to the vacuole and degraded in response to changing cellular conditions.
1 Q99J83 (/IMP)
Blood vessel remodeling GO:0001974
The reorganization or renovation of existing blood vessels.
1 Q99J83 (/IMP)
Regulation of cytokine secretion involved in immune response GO:0002739
Any process that modulates the frequency, rate, or extent of cytokine secretion contributing to an immune response.
1 Q99J83 (/IMP)
Autophagy GO:0006914
The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
1 Q99J83 (/ISO)
Response to fungus GO:0009620
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.
1 Q99J83 (/IMP)
Response to iron(II) ion GO:0010040
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron(II) ion stimulus.
1 Q3MQ06 (/IEP)
Macroautophagy GO:0016236
The major inducible pathway for the general turnover of cytoplasmic constituents in eukaryotic cells, it is also responsible for the degradation of active cytoplasmic enzymes and organelles during nutrient starvation. Macroautophagy involves the formation of double-membrane-bounded autophagosomes which enclose the cytoplasmic constituent targeted for degradation in a membrane-bounded structure. Autophagosomes then fuse with a lysosome (or vacuole) releasing single-membrane-bounded autophagic bodies that are then degraded within the lysosome (or vacuole). Some types of macroautophagy, e.g. pexophagy, mitophagy, involve selective targeting of the targets to be degraded.
1 Q9W3R7 (/ISS)
Cellular homeostasis GO:0019725
Any process involved in the maintenance of an internal steady state at the level of the cell.
1 Q99J83 (/IMP)
Antigen processing and presentation of endogenous antigen GO:0019883
The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of endogenous origin on its cell surface in association with an MHC protein complex.
1 Q99J83 (/IGI)
Antigen processing and presentation of endogenous antigen GO:0019883
The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of endogenous origin on its cell surface in association with an MHC protein complex.
1 Q99J83 (/IMP)
Negative regulation of protein ubiquitination GO:0031397
Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of ubiquitin groups to a protein.
1 Q99J83 (/IMP)
Larval midgut cell programmed cell death GO:0035096
The stage-specific programmed cell death of cells of the larval midgut, during histolysis of the larval organ.
1 Q9W3R7 (/IMP)
Aggrephagy GO:0035973
Selective degradation of protein aggregates by macroautophagy.
1 Q99J83 (/ISO)
Negative stranded viral RNA replication GO:0039689
A viral genome replication process where the template genome is negative stranded, single stranded RNA ((-)ssRNA).
1 Q99J83 (/IMP)
Vasodilation GO:0042311
An increase in the internal diameter of blood vessels, especially arterioles or capillaries, due to relaxation of smooth muscle cells that line the vessels, and usually resulting in a decrease in blood pressure.
1 Q99J83 (/IMP)
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
1 Q99J83 (/IMP)
Post-translational protein modification GO:0043687
The process of covalently altering one or more amino acids in a protein after the protein has been completely translated and released from the ribosome.
1 Q99J83 (/IDA)
Negative thymic T cell selection GO:0045060
The process of elimination of immature T cells in the thymus which react strongly with self-antigens.
1 Q99J83 (/IGI)
Negative thymic T cell selection GO:0045060
The process of elimination of immature T cells in the thymus which react strongly with self-antigens.
1 Q99J83 (/IMP)
Otolith development GO:0048840
The process whose specific outcome is the progression of the otolith over time, from its formation to the mature structure.
1 Q99J83 (/IMP)
Negative regulation of phagocytosis GO:0050765
Any process that stops, prevents, or reduces the frequency, rate or extent of phagocytosis.
1 Q99J83 (/IMP)
Regulation of release of sequestered calcium ion into cytosol GO:0051279
Any process that modulates the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria.
1 Q99J83 (/IMP)
Ventricular cardiac muscle cell development GO:0055015
The process whose specific outcome is the progression of a ventricular cardiac muscle cell over time, from its formation to the mature state. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood out of the organ.
1 Q99J83 (/IMP)
Heart contraction GO:0060047
The multicellular organismal process in which the heart decreases in volume in a characteristic way to propel blood through the body.
1 Q99J83 (/IMP)
Negative regulation of cell death GO:0060548
Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
1 Q99J83 (/ISO)
Chaperone-mediated autophagy GO:0061684
The autophagy process which begins when chaperones and co-chaperones recognize a target motif and unfold the substrate protein. The proteins are then transported to the lysosome where they are degraded.
1 Q3MQ06 (/IMP)
Glycophagy GO:0061723
The selective autophagy process in which cellular glycogen is delivered to the vacuole and degraded in response to changing cellular conditions.
1 Q9W3R7 (/IMP)
Protein lipidation involved in autophagosome assembly GO:0061739
The protein lipidation process by which phosphatidylethanolamine is conjugated to a protein of the ATG8 family, leading to membrane insertion of the protein as a step in autophagosome assembly.
1 Q99J83 (/IMP)
Positive regulation of mucus secretion GO:0070257
Any process that activates or increases the frequency, rate or extent of the regulated release of mucus from a cell or a tissue.
1 Q99J83 (/IMP)
Cellular response to nitrosative stress GO:0071500
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions.
1 Q99J83 (/IMP)
Positive regulation by symbiont of host autophagy GO:0075044
Any process in which a symbiont organism increases the frequency, rate or extent of autophagy in the host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction.
1 Q99J83 (/ISO)
Regulation of cilium assembly GO:1902017
Any process that modulates the frequency, rate or extent of cilium assembly.
1 Q99J83 (/IMP)
Response to fluoride GO:1902617
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluoride stimulus.
1 Q3MQ06 (/IEP)
Regulation of reactive oxygen species metabolic process GO:2000377
Any process that modulates the frequency, rate or extent of reactive oxygen species metabolic process.
1 Q99J83 (/IMP)
Negative regulation of reactive oxygen species metabolic process GO:2000378
Any process that stops, prevents or reduces the frequency, rate or extent of reactive oxygen species metabolic process.
1 Q99J83 (/IMP)
Negative regulation of histone H4-K16 acetylation GO:2000619
Any process that stops, prevents or reduces the frequency, rate or extent of histone H4-K16 acetylation.
1 Q99J83 (/IMP)

There are 16 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Axoneme GO:0005930
The bundle of microtubules and associated proteins that forms the core of cilia (also called flagella) in eukaryotic cells and is responsible for their movements.
11 Q3MQ04 (/ISS) Q3MQ06 (/ISS) Q3MQ24 (/ISS) Q3MQ24 (/ISS) Q3MQ24 (/ISS) Q3MQ24 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS)
(1 more)
Autophagosome GO:0005776
A double-membrane-bounded compartment that engulfs endogenous cellular material as well as invading microorganisms to target them to the lytic vacuole/lysosome for degradation as part of macroautophagy.
7 Q99J83 (/IDA) Q9H1Y0 (/IDA) Q9H1Y0 (/IDA) Q9H1Y0 (/IDA) Q9H1Y0 (/IDA) Q9H1Y0 (/IDA) Q9W3R7 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
6 Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9W3R7 (/ISS)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
6 Q99J83 (/TAS) Q9H1Y0 (/TAS) Q9H1Y0 (/TAS) Q9H1Y0 (/TAS) Q9H1Y0 (/TAS) Q9H1Y0 (/TAS)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
5 Q9H1Y0 (/IDA) Q9H1Y0 (/IDA) Q9H1Y0 (/IDA) Q9H1Y0 (/IDA) Q9H1Y0 (/IDA)
Phagocytic vesicle membrane GO:0030670
The lipid bilayer surrounding a phagocytic vesicle.
5 Q9H1Y0 (/TAS) Q9H1Y0 (/TAS) Q9H1Y0 (/TAS) Q9H1Y0 (/TAS) Q9H1Y0 (/TAS)
Phagophore assembly site membrane GO:0034045
A cellular membrane associated with the phagophore assembly site.
5 Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS) Q9H1Y0 (/ISS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q99J83 (/IDA)
Autophagosome GO:0005776
A double-membrane-bounded compartment that engulfs endogenous cellular material as well as invading microorganisms to target them to the lytic vacuole/lysosome for degradation as part of macroautophagy.
1 Q99J83 (/ISO)
Axoneme GO:0005930
The bundle of microtubules and associated proteins that forms the core of cilia (also called flagella) in eukaryotic cells and is responsible for their movements.
1 Q99J83 (/IDA)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
1 Q99J83 (/ISO)
Axon GO:0030424
The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
1 Q3MQ06 (/IDA)
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
1 Q3MQ06 (/IDA)
Phagophore assembly site membrane GO:0034045
A cellular membrane associated with the phagophore assembly site.
1 Q99J83 (/IDA)
Atg12-Atg5-Atg16 complex GO:0034274
A protein complex required for the expansion of the autophagosomal membrane. In budding yeast, this complex consists of Atg12p, Atg5p and Atg16p.
1 Q9W3R7 (/ISS)
Mitochondria-associated endoplasmic reticulum membrane GO:0044233
A zone of apposition between endoplasmic-reticulum and mitochondrial membranes, structured by bridging complexes. These contact sites are thought to facilitate inter-organelle calcium and phospholipid exchange.
1 Q99J83 (/IDA)
CATH-Gene3D is a Global Biodata Core Resource Learn more...