The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
5' to 3' exonuclease, C-terminal subdomain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 9: Flap endonuclease 1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 34 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
5'-flap endonuclease activity GO:0017108
Catalysis of the cleavage of a 5' flap structure in DNA, but not other DNA structures; processes the 5' ends of Okazaki fragments in lagging strand DNA synthesis.
18 P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA)
(8 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
17 P26793 (/IPI) P26793 (/IPI) P26793 (/IPI) P26793 (/IPI) P26793 (/IPI) P26793 (/IPI) P26793 (/IPI) P39748 (/IPI) P39748 (/IPI) P39748 (/IPI)
(7 more)
5'-3' exonuclease activity GO:0008409
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 5' end.
13 P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA)
(3 more)
Flap endonuclease activity GO:0048256
Catalysis of the cleavage of a flap structure in DNA, but not other DNA structures; processes the ends of Okazaki fragments in lagging strand DNA synthesis.
11 F4K191 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39749 (/IDA) Q7K734 (/IDA) Q7K734 (/IDA)
(1 more)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
6 P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) P39748 (/IMP)
Damaged DNA binding GO:0003684
Interacting selectively and non-covalently with damaged DNA.
6 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS)
Double-stranded DNA binding GO:0003690
Interacting selectively and non-covalently with double-stranded DNA.
6 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS)
Endonuclease activity GO:0004519
Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
6 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS)
RNA-DNA hybrid ribonuclease activity GO:0004523
Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
6 P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA)
Exonuclease activity GO:0004527
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
6 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS)
Double-stranded DNA exodeoxyribonuclease activity GO:0008309
Catalysis of the sequential cleavage of mononucleotides from a free 5' or 3' terminus of a double-stranded DNA molecule.
6 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS)
5'-flap endonuclease activity GO:0017108
Catalysis of the cleavage of a 5' flap structure in DNA, but not other DNA structures; processes the 5' ends of Okazaki fragments in lagging strand DNA synthesis.
6 P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) P39748 (/IMP)
5'-flap endonuclease activity GO:0017108
Catalysis of the cleavage of a 5' flap structure in DNA, but not other DNA structures; processes the 5' ends of Okazaki fragments in lagging strand DNA synthesis.
6 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS)
Endodeoxyribonuclease activity GO:0004520
Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks.
2 Q7K734 (/IDA) Q7K734 (/IDA)
Magnesium ion binding GO:0000287
Interacting selectively and non-covalently with magnesium (Mg) ions.
1 P39749 (/IDA)
Magnesium ion binding GO:0000287
Interacting selectively and non-covalently with magnesium (Mg) ions.
1 Q54NU0 (/ISS)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
1 P39749 (/IDA)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
1 P39749 (/ISO)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
1 Q54NU0 (/ISS)
Nuclease activity GO:0004518
Catalysis of the hydrolysis of ester linkages within nucleic acids.
1 Q09708 (/ISM)
Endonuclease activity GO:0004519
Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
1 Q7K7A9 (/ISS)
RNA-DNA hybrid ribonuclease activity GO:0004523
Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
1 P39749 (/ISO)
Exonuclease activity GO:0004527
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
1 P39749 (/IDA)
Exonuclease activity GO:0004527
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
1 Q54NU0 (/ISS)
Exonuclease activity GO:0004527
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
1 Q5XIP6 (/NAS)
5'-3' exonuclease activity GO:0008409
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 5' end.
1 P39749 (/ISO)
5'-flap endonuclease activity GO:0017108
Catalysis of the cleavage of a 5' flap structure in DNA, but not other DNA structures; processes the 5' ends of Okazaki fragments in lagging strand DNA synthesis.
1 P39749 (/ISO)
Manganese ion binding GO:0030145
Interacting selectively and non-covalently with manganese (Mn) ions.
1 P39749 (/IDA)
Manganese ion binding GO:0030145
Interacting selectively and non-covalently with manganese (Mn) ions.
1 Q54NU0 (/ISS)
Single-stranded DNA 5'-3' exodeoxyribonuclease activity GO:0045145
Catalysis of the sequential cleavage of nucleotides (such as mononucleotides or dinucleotides) from a free 5' terminus of a single-stranded DNA molecule.
1 P39750 (/IDA)
Flap endonuclease activity GO:0048256
Catalysis of the cleavage of a flap structure in DNA, but not other DNA structures; processes the ends of Okazaki fragments in lagging strand DNA synthesis.
1 P39749 (/ISO)
Flap endonuclease activity GO:0048256
Catalysis of the cleavage of a flap structure in DNA, but not other DNA structures; processes the ends of Okazaki fragments in lagging strand DNA synthesis.
1 Q54NU0 (/ISS)
Double-stranded DNA 5'-3' exodeoxyribonuclease activity GO:0051908
Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of a double-stranded DNA molecule.
1 P39750 (/IDA)
5'-3' exodeoxyribonuclease activity involved in UV-damage excision repair GO:1904162
Any 5'-3' exodeoxyribonuclease activity that is involved in UV-damage excision repair.
1 P39750 (/IDA)

There are 33 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA replication, removal of RNA primer GO:0043137
Removal of the Okazaki RNA primer from the lagging strand of replicating DNA, by a combination of the actions of DNA polymerase, DNA helicase and an endonuclease.
13 P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA)
(3 more)
Gene conversion at mating-type locus, DNA repair synthesis GO:0000734
Synthesis of DNA that proceeds from the broken 3' single-strand DNA end uses the homologous intact duplex as the template during gene conversion at the mating-type locus.
7 P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP)
Replicative cell aging GO:0001302
The process associated with progression of the cell from its inception to the end of its lifespan that occurs as the cell continues cycles of growth and division.
7 P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP)
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
7 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) Q9N3T2 (/TAS)
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
7 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) Q9N3T2 (/TAS)
Base-excision repair, base-free sugar-phosphate removal GO:0006286
Excision of the sugar phosphate residue at an AP site, i.e. a deoxyribose sugar with a missing base, by a phosphodiesterase enzyme.
7 P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI)
Base-excision repair, base-free sugar-phosphate removal GO:0006286
Excision of the sugar phosphate residue at an AP site, i.e. a deoxyribose sugar with a missing base, by a phosphodiesterase enzyme.
7 P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP)
Double-strand break repair via nonhomologous end joining GO:0006303
The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear.
7 P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA)
Maintenance of DNA trinucleotide repeats GO:0035753
Any process involved in sustaining the fidelity and copy number of DNA trinucleotide repeats. DNA trinucleotide repeats are naturally occurring runs of three base-pairs.
7 P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI)
Maintenance of DNA trinucleotide repeats GO:0035753
Any process involved in sustaining the fidelity and copy number of DNA trinucleotide repeats. DNA trinucleotide repeats are naturally occurring runs of three base-pairs.
7 P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP)
Double-strand break repair via homologous recombination GO:0000724
The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
6 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS)
Double-strand break repair GO:0006302
The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.
6 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS)
UV protection GO:0009650
Any process in which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV.
6 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS)
Telomere maintenance via semi-conservative replication GO:0032201
The process in which telomeric DNA is synthesized semi-conservatively by the conventional replication machinery and telomeric accessory factors as part of cell cycle DNA replication.
6 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS)
Positive regulation of sister chromatid cohesion GO:0045876
Any process that activates or increases the frequency, rate or extent of sister chromatid cohesion.
6 P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) P39748 (/IMP)
Nucleic acid phosphodiester bond hydrolysis GO:0090305
The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
6 P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA)
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
4 P70040 (/IPI) P70040 (/IPI) P70054 (/IPI) P70054 (/IPI)
Base-excision repair GO:0006284
In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
2 P70040 (/IDA) P70040 (/IDA)
Base-excision repair GO:0006284
In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
2 P70054 (/ISS) P70054 (/ISS)
DNA synthesis involved in DNA repair GO:0000731
Synthesis of DNA that proceeds from the broken 3' single-strand DNA end and uses the homologous intact duplex as the template.
1 P39750 (/TAS)
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
1 P39749 (/IMP)
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
1 Q54NU0 (/ISS)
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
1 P39749 (/IMP)
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
1 Q54NU0 (/ISS)
Apoptotic DNA fragmentation GO:0006309
The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments.
1 Q9N3T2 (/IDA)
Apoptotic DNA fragmentation GO:0006309
The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments.
1 Q9N3T2 (/IGI)
Memory GO:0007613
The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).
1 Q5XIP6 (/IMP)
Memory GO:0007613
The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).
1 P39749 (/ISO)
DNA replication, removal of RNA primer GO:0043137
Removal of the Okazaki RNA primer from the lagging strand of replicating DNA, by a combination of the actions of DNA polymerase, DNA helicase and an endonuclease.
1 P39749 (/ISO)
Positive regulation of sister chromatid cohesion GO:0045876
Any process that activates or increases the frequency, rate or extent of sister chromatid cohesion.
1 P39749 (/ISO)
Retina development in camera-type eye GO:0060041
The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
1 Q6TNU4 (/IMP)
Nucleic acid phosphodiester bond hydrolysis GO:0090305
The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
1 P39749 (/ISO)
Removal of RNA primer involved in mitotic DNA replication GO:1903469
Any DNA replication, removal of RNA primer that is involved in mitotic cell cycle DNA replication.
1 P39750 (/IGI)

There are 18 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
29 F4K191 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P39748 (/IDA) P39748 (/IDA)
(19 more)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
14 P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) Q6FHX6 (/IDA) Q6FHX6 (/IDA) Q6FHX6 (/IDA) Q6FHX6 (/IDA)
(4 more)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
13 P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA)
(3 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
8 P26793 (/HDA) P26793 (/HDA) P26793 (/HDA) P26793 (/HDA) P26793 (/HDA) P26793 (/HDA) P26793 (/HDA) P39750 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
8 F4K191 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA)
Nuclear chromosome, telomeric region GO:0000784
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
6 P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) P39748 (/HDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
6 P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
6 P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) P39748 (/HDA)
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
6 P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 Q09708 (/ISS) Q54NU0 (/ISS)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 P39749 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 P39749 (/TAS)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
1 P39749 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q09708 (/HDA)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
1 P39749 (/ISO)
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
1 P39749 (/ISO)
Site of double-strand break GO:0035861
A region of a chromosome at which a DNA double-strand break has occurred. DNA damage signaling and repair proteins accumulate at the lesion to respond to the damage and repair the DNA to form a continuous DNA helix.
1 P39750 (/IDA)
Nuclear replication fork GO:0043596
The Y-shaped region of a nuclear replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.
1 P39750 (/IC)
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