The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 4: Interleukin enhancer-binding factor 2

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 8 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
92 Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS)
(82 more)
Double-stranded RNA binding GO:0003725
Interacting selectively and non-covalently with double-stranded RNA.
92 Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS)
(82 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
89 F4ZW62 (/IPI) F4ZW62 (/IPI) F4ZW62 (/IPI) F4ZW62 (/IPI) F4ZW62 (/IPI) F4ZW62 (/IPI) F4ZW62 (/IPI) F4ZW62 (/IPI) F4ZW62 (/IPI) F4ZW62 (/IPI)
(79 more)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
44 Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA)
(34 more)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
44 Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO)
(34 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
44 Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA)
(34 more)
Double-stranded RNA binding GO:0003725
Interacting selectively and non-covalently with double-stranded RNA.
44 Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA)
(34 more)
Double-stranded RNA binding GO:0003725
Interacting selectively and non-covalently with double-stranded RNA.
44 Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO)
(34 more)

There are 8 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
92 Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS)
(82 more)
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
92 Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS)
(82 more)
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
44 Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA)
(34 more)
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
44 Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO)
(34 more)
Neutrophil degranulation GO:0043312
The regulated exocytosis of secretory granules containing preformed mediators such as proteases, lipases, and inflammatory mediators by a neutrophil.
44 Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS)
(34 more)
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
44 Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA)
(34 more)
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
44 Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO)
(34 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
1 Q9VG73 (/IC)

There are 17 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
141 B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) F4ZW62 (/IDA)
(131 more)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
141 B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) B4DY09 (/IDA) F4ZW62 (/IDA)
(131 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
92 Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS)
(82 more)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
92 Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS)
(82 more)
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
89 Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS) Q5RFJ1 (/ISS)
(79 more)
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
44 Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA)
(34 more)
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
44 Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS)
(34 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
44 Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO)
(34 more)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
44 Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO)
(34 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
44 Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA) Q12905 (/HDA)
(34 more)
Specific granule lumen GO:0035580
The volume enclosed by the membrane of a specific granule, a granule with a membranous, tubular internal structure, found primarily in mature neutrophil cells. Most are released into the extracellular fluid. Specific granules contain lactoferrin, lysozyme, vitamin B12 binding protein and elastase.
44 Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS)
(34 more)
Tertiary granule lumen GO:1904724
Any membrane-enclosed lumen that is part of a tertiary granule.
44 Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS)
(34 more)
Ficolin-1-rich granule lumen GO:1904813
Any membrane-enclosed lumen that is part of a ficolin-1-rich granule.
44 Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS) Q12905 (/TAS)
(34 more)
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
44 Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA) Q12905 (/IDA)
(34 more)
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
44 Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO) Q9CXY6 (/ISO)
(34 more)
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
1 Q9VG73 (/HDA)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
1 Q9VG73 (/HDA)
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