The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Homeodomain-like
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 87: DNA methyltransferase 1-associated protein 1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 7 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
21 Q8VZL6 (/IPI) Q8VZL6 (/IPI) Q9JI44 (/IPI) Q9NPF5 (/IPI) Q9NPF5 (/IPI) Q9NPF5 (/IPI) Q9NPF5 (/IPI) Q9NPF5 (/IPI) Q9NPF5 (/IPI) Q9NPF5 (/IPI)
(11 more)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
18 Q9NPF5 (/ISA) Q9NPF5 (/ISA) Q9NPF5 (/ISA) Q9NPF5 (/ISA) Q9NPF5 (/ISA) Q9NPF5 (/ISA) Q9NPF5 (/ISA) Q9NPF5 (/ISA) Q9NPF5 (/ISA) Q9NPF5 (/ISA)
(8 more)
RNA polymerase II repressing transcription factor binding GO:0001103
Interacting selectively and non-covalently with an RNA polymerase II transcription repressing factor, a protein involved in negative regulation of transcription.
18 Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA)
(8 more)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
2 Q8VZL6 (/IDA) Q8VZL6 (/IDA)
RNA polymerase II repressing transcription factor binding GO:0001103
Interacting selectively and non-covalently with an RNA polymerase II transcription repressing factor, a protein involved in negative regulation of transcription.
1 Q9JI44 (/ISO)
RNA polymerase II repressing transcription factor binding GO:0001103
Interacting selectively and non-covalently with an RNA polymerase II transcription repressing factor, a protein involved in negative regulation of transcription.
1 Q9JI44 (/ISS)
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
1 Q9JI44 (/IDA)

There are 21 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
18 Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA)
(8 more)
DNA methylation GO:0006306
The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
18 Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS)
(8 more)
Positive regulation of protein import into nucleus GO:0042307
Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus.
18 Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA)
(8 more)
Histone H4 acetylation GO:0043967
The modification of histone H4 by the addition of an acetyl group.
18 Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA)
(8 more)
Histone H2A acetylation GO:0043968
The modification of histone H2A by the addition of an acetyl group.
18 Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA)
(8 more)
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
18 Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS)
(8 more)
Retina development in camera-type eye GO:0060041
The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
2 B8JI50 (/IMP) Q7ZUN3 (/IMP)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
1 Q9JI44 (/ISO)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
1 Q9JI44 (/ISS)
Positive regulation of antimicrobial peptide production GO:0002225
Any process that activates or increases the frequency, rate, or extent of antimicrobial peptide production.
1 Q7K3D8 (/IMP)
Negative regulation of cell fate specification GO:0009996
Any process that restricts, stops or prevents a cell from adopting a specific cell fate.
1 A8XQE0 (/IMP)
Histone acetylation GO:0016573
The modification of a histone by the addition of an acetyl group.
1 Q7K3D8 (/IDA)
Positive regulation of protein import into nucleus GO:0042307
Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus.
1 Q9JI44 (/ISO)
Positive regulation of protein import into nucleus GO:0042307
Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus.
1 Q9JI44 (/ISS)
Histone H4 acetylation GO:0043967
The modification of histone H4 by the addition of an acetyl group.
1 Q9JI44 (/ISO)
Histone H4 acetylation GO:0043967
The modification of histone H4 by the addition of an acetyl group.
1 Q9JI44 (/ISS)
Histone H2A acetylation GO:0043968
The modification of histone H2A by the addition of an acetyl group.
1 Q9JI44 (/ISO)
Histone H2A acetylation GO:0043968
The modification of histone H2A by the addition of an acetyl group.
1 Q9JI44 (/ISS)
Positive regulation of innate immune response GO:0045089
Any process that activates or increases the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection.
1 Q7K3D8 (/IMP)
Response to ethanol GO:0045471
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
1 Q568Y6 (/IEP)
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
1 Q9JI44 (/IDA)

There are 18 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
21 Q7K3D8 (/IDA) Q8VZL6 (/IDA) Q8VZL6 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA)
(11 more)
NuA4 histone acetyltransferase complex GO:0035267
A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
21 Q7K3D8 (/IDA) Q8VZL6 (/IDA) Q8VZL6 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA)
(11 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
18 Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS) Q9NPF5 (/NAS)
(8 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
18 Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA)
(8 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
18 Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS) Q9NPF5 (/TAS)
(8 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
18 Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA)
(8 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
18 Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA) Q9NPF5 (/IDA)
(8 more)
Swr1 complex GO:0000812
A multisubunit protein complex that is involved in chromatin remodeling. It is required for the incorporation of the histone variant H2AZ into chromatin. In S. cerevisiae, the complex contains Swr1p, a Swi2/Snf2-related ATPase, and 12 additional subunits.
2 Q8VZL6 (/IDA) Q8VZL6 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 Q8VZL6 (/IPI) Q8VZL6 (/IPI)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9JI44 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9JI44 (/ISS)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
1 Q9JI44 (/ISO)
Replication fork GO:0005657
The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.
1 Q9JI44 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q9JI44 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q9JI44 (/ISS)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q9JI44 (/ISO)
NuA4 histone acetyltransferase complex GO:0035267
A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
1 Q9JI44 (/ISO)
NuA4 histone acetyltransferase complex GO:0035267
A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
1 Q9JI44 (/ISS)