The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Homeodomain-like
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 81: Empty spiracles homeobox 2

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
28 Q04741 (/IPI) Q04742 (/IPI) Q04743 (/IPI) Q04743 (/IPI) Q04743 (/IPI) Q04743 (/IPI) Q04743 (/IPI) Q04743 (/IPI) Q04743 (/IPI) Q04743 (/IPI)
(18 more)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
27 Q04741 (/ISA) Q04743 (/ISA) Q04743 (/ISA) Q04743 (/ISA) Q04743 (/ISA) Q04743 (/ISA) Q04743 (/ISA) Q04743 (/ISA) Q04743 (/ISA) Q04743 (/ISA)
(17 more)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
27 Q04741 (/ISM) Q04743 (/ISM) Q04743 (/ISM) Q04743 (/ISM) Q04743 (/ISM) Q04743 (/ISM) Q04743 (/ISM) Q04743 (/ISM) Q04743 (/ISM) Q04743 (/ISM)
(17 more)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
26 Q04743 (/NAS) Q04743 (/NAS) Q04743 (/NAS) Q04743 (/NAS) Q04743 (/NAS) Q04743 (/NAS) Q04743 (/NAS) Q04743 (/NAS) Q04743 (/NAS) Q04743 (/NAS)
(16 more)
RNA polymerase II regulatory region sequence-specific DNA binding GO:0000977
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
1 P18488 (/IDA)
RNA polymerase II distal enhancer sequence-specific DNA binding GO:0000980
Interacting selectively and non-covalently with a RNA polymerase II (Pol II) distal enhancer. In mammalian cells, enhancers are distal sequences that increase the utilization of some promoters, and can function in either orientation and in any location (upstream or downstream) relative to the core promoter.
1 P18488 (/IDA)

There are 41 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
18 P18488 (/IMP) Q04742 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP)
(8 more)
Regulation of gene expression GO:0010468
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
17 P18488 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP)
(7 more)
Cerebral cortex regionalization GO:0021796
The regionalization process that results in the creation of areas within the cerebral cortex that will direct the behavior of cell migration and differentiation as the cortex develops.
17 Q04742 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI)
(7 more)
Cerebral cortex development GO:0021987
The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon.
17 Q04742 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI)
(7 more)
Neuron differentiation GO:0030182
The process in which a relatively unspecialized cell acquires specialized features of a neuron.
17 Q04742 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP)
(7 more)
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
17 Q04742 (/IDA) Q04744 (/IDA) Q04744 (/IDA) Q04744 (/IDA) Q04744 (/IDA) Q04744 (/IDA) Q04744 (/IDA) Q04744 (/IDA) Q04744 (/IDA) Q04744 (/IDA)
(7 more)
Anterior/posterior pattern specification GO:0009952
The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
16 Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI)
(6 more)
Anterior/posterior pattern specification GO:0009952
The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
16 Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP)
(6 more)
Dentate gyrus development GO:0021542
The process whose specific outcome is the progression of the dentate gyrus over time, from its formation to the mature structure. The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus.
16 Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP)
(6 more)
Cerebral cortex regionalization GO:0021796
The regionalization process that results in the creation of areas within the cerebral cortex that will direct the behavior of cell migration and differentiation as the cortex develops.
16 Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP)
(6 more)
Cell proliferation in forebrain GO:0021846
The creation of greater cell numbers in the forebrain due to cell division of progenitor cells.
16 Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP)
(6 more)
Forebrain cell migration GO:0021885
The orderly movement of a cell from one site to another at least one of which is located in the forebrain.
16 Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP)
(6 more)
Forebrain development GO:0030900
The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions).
16 Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI)
(6 more)
Forebrain development GO:0030900
The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions).
16 Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP) Q04744 (/IMP)
(6 more)
Ureter morphogenesis GO:0072197
The process in which the anatomical structures of the ureter are generated and organized. The ureter is a muscular tube that transports urine from the kidney to the urinary bladder.
16 Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI) Q04744 (/IGI)
(6 more)
Kidney morphogenesis GO:0060993
Morphogenesis of a kidney. A kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine.
4 E1BT91 (/NAS) E1BT91 (/NAS) E1BT91 (/NAS) E1BT91 (/NAS)
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
2 Q568U8 (/IEP) Q90264 (/IEP)
Vestibular receptor cell stereocilium organization GO:0060121
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of vestibular hair cells.
2 Q568U8 (/IMP) Q90264 (/IMP)
Embryonic development via the syncytial blastoderm GO:0001700
The process whose specific outcome is the progression of the embryo over time, from zygote formation through syncytial blastoderm to the hatching of the first instar larva. An example of this process is found in Drosophila melanogaster.
1 P18488 (/IMP)
In utero embryonic development GO:0001701
The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
1 Q04742 (/IGI)
Pattern specification process GO:0007389
Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
1 P18488 (/NAS)
Axonogenesis GO:0007409
De novo generation of a long process of a neuron, including the terminal branched region. Refers to the morphogenesis or creation of shape or form of the developing axon, which carries efferent (outgoing) action potentials from the cell body towards target cells.
1 P18488 (/IMP)
Ventral cord development GO:0007419
The process whose specific outcome is the progression of the ventral cord over time, from its formation to the mature structure. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms.
1 P18488 (/IMP)
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
1 P18488 (/NAS)
Open tracheal system development GO:0007424
The process whose specific outcome is the progression of an open tracheal system over time, from its formation to the mature structure. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster.
1 P18488 (/IEP)
Open tracheal system development GO:0007424
The process whose specific outcome is the progression of an open tracheal system over time, from its formation to the mature structure. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster.
1 P18488 (/IMP)
Post-embryonic development GO:0009791
The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development.
1 Q04742 (/IMP)
Neuroblast development GO:0014019
The process aimed at the progression of a neuroblast over time, from initial commitment of the cell to a specific state, to the mature neuroblast. It does not include processes where the neuroblast turns into a glial cell or a neuron.
1 P18488 (/IMP)
Telencephalon development GO:0021537
The process whose specific outcome is the progression of the telencephalon over time, from its formation to the mature structure. The telencephalon is the paired anteriolateral division of the prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived.
1 Q04742 (/IGI)
Cerebral cortex neuron differentiation GO:0021895
The process in which a relatively unspecialized cell acquires specialized features of a neuron residing in the cerebral cortex.
1 Q04742 (/IGI)
Cerebral cortex development GO:0021987
The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon.
1 Q04742 (/IMP)
Spiracle morphogenesis, open tracheal system GO:0035277
The process in which the anatomical structures of a spiracle are generated and organized. Spiracles are the openings in the insect open tracheal system; externally they connect to the epidermis and internally they connect to the tracheal trunk.
1 P18488 (/IMP)
Brain segmentation GO:0035284
Division of the brain into a series of semi-repetitive parts or segments.
1 P18488 (/IMP)
Anterior head segmentation GO:0035288
Partitioning the insect head anlage into procephalic (labral, (ocular), antennal and intercalary) segments. The procephalic segments lie anterior to the gnathal (posterior head) segments, and are pattered by different segmentation gene cascades to the abdominal, thoracic and posterior head (gnathal) segments.
1 P18488 (/TAS)
Dendrite morphogenesis GO:0048813
The process in which the anatomical structures of a dendrite are generated and organized.
1 P18488 (/IMP)
Brain morphogenesis GO:0048854
The process in which the anatomical structures of the brain are generated and organized. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
1 Q04742 (/IGI)
Homeostasis of number of cells GO:0048872
Any biological process involved in the maintenance of the steady-state number of cells within a population of cells.
1 Q04742 (/IGI)
Radial glial cell differentiation GO:0060019
The process in which neuroepithelial cells of the neural tube give rise to radial glial cells, specialized bipotential progenitors cells of the brain. Differentiation includes the processes involved in commitment of a cell to a specific fate.
1 Q04742 (/IGI)
Neuroepithelial cell differentiation GO:0060563
The process in which epiblast cells acquire specialized features of neuroepithelial cells.
1 Q04742 (/IGI)
Regulation of oligodendrocyte progenitor proliferation GO:0070445
Any process that modulates the frequency, rate or extent of oligodendrocyte progenitor proliferation.
1 Q04742 (/IGI)
Neuron projection extension GO:1990138
Long distance growth of a single neuron projection involved in cellular development. A neuron projection is a prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
1 Q04742 (/IGI)

There are 4 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
4 G5ECT8 (/IDA) P18488 (/IDA) Q04741 (/IDA) Q04742 (/IDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
3 F8W1B5 (/IDA) F8W1B5 (/IDA) Q04741 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q04742 (/ISO)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
1 Q04742 (/ISO)
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