The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Homeodomain-like
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 52: Arginine-glutamic acid dipeptide (RE) repeats

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 10 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
10 M9NDL9 (/IDA) M9NE54 (/IDA) M9PES2 (/IDA) M9PHT1 (/IDA) Q7KUA8 (/IDA) Q86BH2 (/IDA) Q8IQA6 (/IDA) Q8T9N4 (/IDA) Q9NHX6 (/IDA) Q9VSK5 (/IDA)
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
10 M9NDL9 (/IDA) M9NE54 (/IDA) M9PES2 (/IDA) M9PHT1 (/IDA) Q7KUA8 (/IDA) Q86BH2 (/IDA) Q8IQA6 (/IDA) Q8T9N4 (/IDA) Q9NHX6 (/IDA) Q9VSK5 (/IDA)
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
10 M9NDL9 (/IGI) M9NE54 (/IGI) M9PES2 (/IGI) M9PHT1 (/IGI) Q7KUA8 (/IGI) Q86BH2 (/IGI) Q8IQA6 (/IGI) Q8T9N4 (/IGI) Q9NHX6 (/IGI) Q9VSK5 (/IGI)
Histone deacetylase activity GO:0004407
Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes.
10 M9NDL9 (/IDA) M9NE54 (/IDA) M9PES2 (/IDA) M9PHT1 (/IDA) Q7KUA8 (/IDA) Q86BH2 (/IDA) Q8IQA6 (/IDA) Q8T9N4 (/IDA) Q9NHX6 (/IDA) Q9VSK5 (/IDA)
Repressing transcription factor binding GO:0070491
Interacting selectively and non-covalently with a transcription repressor, any protein whose activity is required to prevent or downregulate transcription.
10 M9NDL9 (/IPI) M9NE54 (/IPI) M9PES2 (/IPI) M9PHT1 (/IPI) Q7KUA8 (/IPI) Q86BH2 (/IPI) Q8IQA6 (/IPI) Q8T9N4 (/IPI) Q9NHX6 (/IPI) Q9VSK5 (/IPI)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
4 Q80TZ9 (/IPI) Q8IQA6 (/IPI) Q9P2R6 (/IPI) Q9P2R6 (/IPI)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
2 Q9P2R6 (/ISA) Q9P2R6 (/ISA)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
2 Q9P2R6 (/ISM) Q9P2R6 (/ISM)
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
1 Q80TZ9 (/IDA)
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
1 Q80TZ9 (/IMP)

There are 30 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Negative regulation of smoothened signaling pathway GO:0045879
Any process that stops, prevents, or reduces the frequency, rate or extent of smoothened signaling.
12 E7F226 (/IMP) F1QQN6 (/IMP) M9NDL9 (/IMP) M9NE54 (/IMP) M9PES2 (/IMP) M9PHT1 (/IMP) Q7KUA8 (/IMP) Q86BH2 (/IMP) Q8IQA6 (/IMP) Q8T9N4 (/IMP)
(2 more)
Eye development GO:0001654
The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight.
10 M9NDL9 (/IMP) M9NE54 (/IMP) M9PES2 (/IMP) M9PHT1 (/IMP) Q7KUA8 (/IMP) Q86BH2 (/IMP) Q8IQA6 (/IMP) Q8T9N4 (/IMP) Q9NHX6 (/IMP) Q9VSK5 (/IMP)
Inter-male aggressive behavior GO:0002121
Aggressive behavior based on competition between males of the same species over access to resources such as females, dominance, status, etc. and characterized by noise, threats, and is often less injurious.
10 M9NDL9 (/IMP) M9NE54 (/IMP) M9PES2 (/IMP) M9PHT1 (/IMP) Q7KUA8 (/IMP) Q86BH2 (/IMP) Q8IQA6 (/IMP) Q8T9N4 (/IMP) Q9NHX6 (/IMP) Q9VSK5 (/IMP)
Segment specification GO:0007379
The process in which segments assume individual identities; exemplified in insects by the actions of the products of the homeotic genes.
10 M9NDL9 (/HMP) M9NE54 (/HMP) M9PES2 (/HMP) M9PHT1 (/HMP) Q7KUA8 (/HMP) Q86BH2 (/HMP) Q8IQA6 (/HMP) Q8T9N4 (/HMP) Q9NHX6 (/HMP) Q9VSK5 (/HMP)
Imaginal disc-derived leg morphogenesis GO:0007480
The process in which the anatomical structures of a leg derived from an imaginal disc are generated and organized. A leg is a limb on which an animal walks and stands. An example of this is found in Drosophila melanogaster.
10 M9NDL9 (/IMP) M9NE54 (/IMP) M9PES2 (/IMP) M9PHT1 (/IMP) Q7KUA8 (/IMP) Q86BH2 (/IMP) Q8IQA6 (/IMP) Q8T9N4 (/IMP) Q9NHX6 (/IMP) Q9VSK5 (/IMP)
Larval somatic muscle development GO:0007526
The process whose specific outcome is the progression of the larval somatic muscle over time, from its formation to the mature structure.
10 M9NDL9 (/IEP) M9NE54 (/IEP) M9PES2 (/IEP) M9PHT1 (/IEP) Q7KUA8 (/IEP) Q86BH2 (/IEP) Q8IQA6 (/IEP) Q8T9N4 (/IEP) Q9NHX6 (/IEP) Q9VSK5 (/IEP)
Larval somatic muscle development GO:0007526
The process whose specific outcome is the progression of the larval somatic muscle over time, from its formation to the mature structure.
10 M9NDL9 (/IMP) M9NE54 (/IMP) M9PES2 (/IMP) M9PHT1 (/IMP) Q7KUA8 (/IMP) Q86BH2 (/IMP) Q8IQA6 (/IMP) Q8T9N4 (/IMP) Q9NHX6 (/IMP) Q9VSK5 (/IMP)
Imaginal disc-derived wing vein morphogenesis GO:0008586
The process in which anatomical structures of the veins on an imaginal disc-derived wing are generated and organized.
10 M9NDL9 (/IMP) M9NE54 (/IMP) M9PES2 (/IMP) M9PHT1 (/IMP) Q7KUA8 (/IMP) Q86BH2 (/IMP) Q8IQA6 (/IMP) Q8T9N4 (/IMP) Q9NHX6 (/IMP) Q9VSK5 (/IMP)
Embryonic pattern specification GO:0009880
The process that results in the patterns of cell differentiation that will arise in an embryo.
10 M9NDL9 (/IMP) M9NE54 (/IMP) M9PES2 (/IMP) M9PHT1 (/IMP) Q7KUA8 (/IMP) Q86BH2 (/IMP) Q8IQA6 (/IMP) Q8T9N4 (/IMP) Q9NHX6 (/IMP) Q9VSK5 (/IMP)
Regulation of histone acetylation GO:0035065
Any process that modulates the frequency, rate or extent of the addition of an acetyl group to a histone protein.
10 M9NDL9 (/IMP) M9NE54 (/IMP) M9PES2 (/IMP) M9PHT1 (/IMP) Q7KUA8 (/IMP) Q86BH2 (/IMP) Q8IQA6 (/IMP) Q8T9N4 (/IMP) Q9NHX6 (/IMP) Q9VSK5 (/IMP)
Segmentation GO:0035282
The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis.
10 M9NDL9 (/IMP) M9NE54 (/IMP) M9PES2 (/IMP) M9PHT1 (/IMP) Q7KUA8 (/IMP) Q86BH2 (/IMP) Q8IQA6 (/IMP) Q8T9N4 (/IMP) Q9NHX6 (/IMP) Q9VSK5 (/IMP)
Negative regulation of epidermal growth factor receptor signaling pathway GO:0042059
Any process that stops, prevents, or reduces the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity.
10 M9NDL9 (/IGI) M9NE54 (/IGI) M9PES2 (/IGI) M9PHT1 (/IGI) Q7KUA8 (/IGI) Q86BH2 (/IGI) Q8IQA6 (/IGI) Q8T9N4 (/IGI) Q9NHX6 (/IGI) Q9VSK5 (/IGI)
Negative regulation of smoothened signaling pathway GO:0045879
Any process that stops, prevents, or reduces the frequency, rate or extent of smoothened signaling.
10 M9NDL9 (/IPI) M9NE54 (/IPI) M9PES2 (/IPI) M9PHT1 (/IPI) Q7KUA8 (/IPI) Q86BH2 (/IPI) Q8IQA6 (/IPI) Q8T9N4 (/IPI) Q9NHX6 (/IPI) Q9VSK5 (/IPI)
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
10 M9NDL9 (/IDA) M9NE54 (/IDA) M9PES2 (/IDA) M9PHT1 (/IDA) Q7KUA8 (/IDA) Q86BH2 (/IDA) Q8IQA6 (/IDA) Q8T9N4 (/IDA) Q9NHX6 (/IDA) Q9VSK5 (/IDA)
Regulation of histone deacetylation GO:0031063
Any process that modulates the frequency, rate or extent of the removal of acetyl groups from histones.
2 E7F226 (/IMP) F1QQN6 (/IMP)
Regulation of fibroblast growth factor receptor signaling pathway GO:0040036
Any process that modulates the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity.
2 E7F226 (/IGI) F1QQN6 (/IGI)
Regulation of fibroblast growth factor receptor signaling pathway GO:0040036
Any process that modulates the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity.
2 E7F226 (/IMP) F1QQN6 (/IMP)
Inner ear development GO:0048839
The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure.
2 E7F226 (/IMP) F1QQN6 (/IMP)
Cartilage development GO:0051216
The process whose specific outcome is the progression of a cartilage element over time, from its formation to the mature structure. Cartilage elements are skeletal elements that consist of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
2 E7F226 (/IMP) F1QQN6 (/IMP)
Pharyngeal system development GO:0060037
The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear.
2 E7F226 (/IGI) F1QQN6 (/IGI)
Pharyngeal system development GO:0060037
The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear.
2 E7F226 (/IMP) F1QQN6 (/IMP)
Cartilage morphogenesis GO:0060536
The process in which the anatomical structures of cartilage are generated and organized.
2 E7F226 (/IMP) F1QQN6 (/IMP)
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
1 Q80TZ9 (/IPI)
Cerebellum development GO:0021549
The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills.
1 Q80TZ9 (/IMP)
Cerebellar Purkinje cell layer maturation GO:0021691
A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar Purkinje cell layer to attain its fully functional state. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells.
1 Q80TZ9 (/IMP)
Cerebellar granule cell precursor proliferation GO:0021930
The multiplication or reproduction of neuroblasts that will give rise to granule cells. A granule cell is a glutamatergic interneuron found in the cerebellar cortex.
1 Q80TZ9 (/IMP)
Radial glia guided migration of Purkinje cell GO:0021942
The migration of postmitotic a Purkinje cell along radial glial cells from the ventricular zone to the Purkinje cell layer.
1 Q80TZ9 (/IMP)
Branching morphogenesis of a nerve GO:0048755
The process in which the anatomical structures of branches in a nerve are generated and organized. This term refers to an anatomical structure (nerve) not a cell (neuron).
1 Q80TZ9 (/IMP)
Dendrite morphogenesis GO:0048813
The process in which the anatomical structures of a dendrite are generated and organized.
1 Q80TZ9 (/IMP)
Wnt signaling pathway, planar cell polarity pathway GO:0060071
The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity.
1 Q9NHX6 (/TAS)

There are 5 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
11 M9NDL9 (/IDA) M9NE54 (/IDA) M9PES2 (/IDA) M9PHT1 (/IDA) Q7KUA8 (/IDA) Q80TZ9 (/IDA) Q86BH2 (/IDA) Q8IQA6 (/IDA) Q8T9N4 (/IDA) Q9NHX6 (/IDA)
(1 more)
Polytene chromosome interband GO:0005705
A stretch of less tightly packed chromatin along the polytene chromosome, found between bands.
10 M9NDL9 (/IDA) M9NE54 (/IDA) M9PES2 (/IDA) M9PHT1 (/IDA) Q7KUA8 (/IDA) Q86BH2 (/IDA) Q8IQA6 (/IDA) Q8T9N4 (/IDA) Q9NHX6 (/IDA) Q9VSK5 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 Q9P2R6 (/NAS) Q9P2R6 (/NAS)
Histone deacetylase complex GO:0000118
A protein complex that possesses histone deacetylase activity.
1 Q80TZ9 (/IPI)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q9NHX6 (/TAS)
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