The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Homeodomain-like
".
FunFam 356: MYB transcription factor
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 8 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
11 |
F4J1R5 (/ISS)
F4J1R5 (/ISS)
Q6R053 (/ISS)
Q6R0C4 (/ISS)
Q9FX36 (/ISS)
Q9FX36 (/ISS)
Q9LQX5 (/ISS)
Q9LQX5 (/ISS)
Q9SEZ4 (/ISS)
Q9SZC2 (/ISS)
(1 more) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
4 | Q6R053 (/IPI) Q9SEZ4 (/IPI) Q9SZC2 (/IPI) Q9SZC2 (/IPI) |
|
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
2 | Q9FX36 (/ISS) Q9FX36 (/ISS) |
|
Transcription regulatory region DNA binding GO:0044212
Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
|
2 | Q9FX36 (/IPI) Q9FX36 (/IPI) |
|
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
|
1 | Q6R053 (/IDA) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
1 | Q6R053 (/IDA) |
|
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
|
1 | Q6R053 (/IDA) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
1 | Q6R053 (/IPI) |
There are 20 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
6 | F4J1R5 (/TAS) F4J1R5 (/TAS) Q6R053 (/TAS) Q9LQX5 (/TAS) Q9LQX5 (/TAS) Q9SEZ4 (/TAS) |
|
Regulation of secondary cell wall biogenesis GO:2000652
Any process that modulates the frequency, rate or extent of secondary cell wall biogenesis.
|
5 | Q6R0C4 (/IMP) Q9FX36 (/IMP) Q9FX36 (/IMP) Q9SZC2 (/IMP) Q9SZC2 (/IMP) |
|
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
3 | Q6R053 (/IDA) Q9SZC2 (/IDA) Q9SZC2 (/IDA) |
|
Organ boundary specification between lateral organs and the meristem GO:0010199
The process in which boundaries between lateral organs and the meristem is established and maintained.
|
2 | Q9LQX5 (/IMP) Q9LQX5 (/IMP) |
|
Endothelial cell proliferation GO:0001935
The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium.
|
1 | Q6R053 (/IMP) |
|
Response to water deprivation GO:0009414
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
|
1 | Q6R0C4 (/IMP) |
|
Response to abscisic acid GO:0009737
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
|
1 | Q6R0C4 (/IEP) |
|
Response to abscisic acid GO:0009737
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
|
1 | Q6R0C4 (/IMP) |
|
Plant-type secondary cell wall biogenesis GO:0009834
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana.
|
1 | Q6R0C4 (/IMP) |
|
Organ boundary specification between lateral organs and the meristem GO:0010199
The process in which boundaries between lateral organs and the meristem is established and maintained.
|
1 | Q9SEZ4 (/IGI) |
|
Negative regulation of long-day photoperiodism, flowering GO:0048579
Any process that stops, prevents or reduces long-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase.
|
1 | Q6R053 (/IMP) |
|
Negative regulation of cell division GO:0051782
Any process that stops, prevents, or reduces the frequency, rate or extent of cell division.
|
1 | Q6R053 (/IMP) |
|
Cellular response to brassinosteroid stimulus GO:0071367
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus.
|
1 | Q6R053 (/IEP) |
|
Integument development GO:0080060
The process whose specific outcome is the progression of the integument over time, from its formation to the mature structure. Integument is one of the layers of tissue that usually covers the ovule, enveloping the nucellus and forming the micropyle at the apex.
|
1 | Q6R053 (/IMP) |
|
Regulation of seed growth GO:0080113
Any process that modulates the frequency, rate or extent of growth of the seed of an plant.
|
1 | Q6R053 (/IMP) |
|
Negative regulation of secondary cell wall biogenesis GO:1901347
Any process that stops, prevents or reduces the frequency, rate or extent of secondary cell wall biogenesis.
|
1 | Q6R0C4 (/IMP) |
|
Positive regulation of secondary cell wall biogenesis GO:1901348
Any process that activates or increases the frequency, rate or extent of secondary cell wall biogenesis.
|
1 | Q6R0C4 (/IMP) |
|
Response to salt GO:1902074
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salt stimulus.
|
1 | Q6R0C4 (/IEP) |
|
Response to salt GO:1902074
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salt stimulus.
|
1 | Q6R0C4 (/IMP) |
|
Quiescent center organization GO:1904961
The process that contributes to the act of creating the structural organization of the quiescent center. This process pertains to the physical shaping of a rudimentary structure.
|
1 | Q6R053 (/IMP) |
There are 2 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
6 | Q6R053 (/IDA) Q6R0C4 (/IDA) Q9FX36 (/IDA) Q9FX36 (/IDA) Q9SZC2 (/IDA) Q9SZC2 (/IDA) |
|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | Q6R053 (/IDA) |