CATH Superfamily 1.10.10.10
Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain
".
FunFam 25: 40S ribosomal protein S10
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 13 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
62 |
O01869 (/IPI)
P46783 (/IPI)
P46783 (/IPI)
P46783 (/IPI)
P46783 (/IPI)
P46783 (/IPI)
P46783 (/IPI)
P46783 (/IPI)
P46783 (/IPI)
P46783 (/IPI)
(52 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
38 |
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
(28 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
15 |
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
Q08745 (/NAS)
Q08745 (/NAS)
(5 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
8 | O13614 (/ISO) O14112 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) |
TRNA binding GO:0000049
Interacting selectively and non-covalently with transfer RNA.
|
6 | P63326 (/IDA) P63326 (/IDA) P63326 (/IDA) P63326 (/IDA) P63326 (/IDA) P63326 (/IDA) |
TRNA binding GO:0000049
Interacting selectively and non-covalently with transfer RNA.
|
6 | P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
6 | P63326 (/IMP) P63326 (/IMP) P63326 (/IMP) P63326 (/IMP) P63326 (/IMP) P63326 (/IMP) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
5 | Q9FFS8 (/IDA) Q9FFS8 (/IDA) Q9LTF2 (/IDA) Q9LTF2 (/IDA) Q9SW09 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
5 | Q9FFS8 (/IDA) Q9FFS8 (/IDA) Q9LTF2 (/IDA) Q9LTF2 (/IDA) Q9SW09 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
3 | G4NC88 (/ISS) G4NC88 (/ISS) G4NC88 (/ISS) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
3 | Q9VB14 (/TAS) Q9VWG3 (/TAS) Q9VWG3 (/TAS) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
2 | Q9VWG3 (/HDA) Q9VWG3 (/HDA) |
Inositol hexakisphosphate binding GO:0000822
Interacting selectively and non-covalently with inositol hexakisphosphate.
|
1 | O77082 (/IDA) |
There are 19 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
38 |
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
(28 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
38 |
P46783 (/IC)
P46783 (/IC)
P46783 (/IC)
P46783 (/IC)
P46783 (/IC)
P46783 (/IC)
P46783 (/IC)
P46783 (/IC)
P46783 (/IC)
P46783 (/IC)
(28 more) |
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
|
38 |
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
(28 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
38 |
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
(28 more) |
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
|
38 |
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
(28 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
15 |
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
Q08745 (/NAS)
Q08745 (/NAS)
(5 more) |
RRNA export from nucleus GO:0006407
The directed movement of rRNA from the nucleus to the cytoplasm; the rRNA is usually in the form of ribonucleoproteins.
|
15 |
P46784 (/IGI)
P46784 (/IGI)
P46784 (/IGI)
P46784 (/IGI)
P46784 (/IGI)
P46784 (/IGI)
P46784 (/IGI)
P46784 (/IGI)
Q08745 (/IGI)
Q08745 (/IGI)
(5 more) |
Cellular response to amino acid starvation GO:0034198
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of amino acids.
|
15 |
P46784 (/IDA)
P46784 (/IDA)
P46784 (/IDA)
P46784 (/IDA)
P46784 (/IDA)
P46784 (/IDA)
P46784 (/IDA)
P46784 (/IDA)
Q08745 (/IDA)
Q08745 (/IDA)
(5 more) |
Positive regulation of protein kinase activity GO:0045860
Any process that activates or increases the frequency, rate or extent of protein kinase activity.
|
15 |
P46784 (/IDA)
P46784 (/IDA)
P46784 (/IDA)
P46784 (/IDA)
P46784 (/IDA)
P46784 (/IDA)
P46784 (/IDA)
P46784 (/IDA)
Q08745 (/IDA)
Q08745 (/IDA)
(5 more) |
Positive regulation of protein phosphorylation GO:0001934
Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
|
8 | P46784 (/IDA) P46784 (/IDA) P46784 (/IDA) P46784 (/IDA) P46784 (/IDA) P46784 (/IDA) P46784 (/IDA) P46784 (/IDA) |
Ribosomal small subunit assembly GO:0000028
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.
|
6 | P63326 (/IMP) P63326 (/IMP) P63326 (/IMP) P63326 (/IMP) P63326 (/IMP) P63326 (/IMP) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
3 | Q9VB14 (/TAS) Q9VWG3 (/TAS) Q9VWG3 (/TAS) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
3 | G4NC88 (/ISS) G4NC88 (/ISS) G4NC88 (/ISS) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
2 | Q9VWG3 (/IC) Q9VWG3 (/IC) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
2 | O13614 (/ISO) O14112 (/ISO) |
Auxin homeostasis GO:0010252
A homeostatic process that maintains an endogenous steady-state concentration of primary auxin, or constant level of auxin in a biological system, by a number of biochemical processes including transport, biosynthesis, catabolism and conjugation.
|
2 | Q9FFS8 (/IGI) Q9FFS8 (/IGI) |
Axillary shoot meristem initiation GO:0090506
A developmental process that results in the initiation of an axillary shoot meristem. An axillary shoot meristem is a shoot meristem formed in the axil of a leaf.
|
2 | Q9FFS8 (/IGI) Q9FFS8 (/IGI) |
Regulation of secondary shoot formation GO:2000032
Any process that modulates the frequency, rate or extent of secondary shoot formation.
|
2 | Q9FFS8 (/IGI) Q9FFS8 (/IGI) |
Determination of adult lifespan GO:0008340
The control of viability and duration in the adult phase of the life-cycle.
|
1 | O01869 (/IMP) |
There are 26 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
50 |
P63325 (/ISS)
P63325 (/ISS)
P63325 (/ISS)
P63325 (/ISS)
P63325 (/ISS)
P63325 (/ISS)
P63326 (/ISS)
P63326 (/ISS)
P63326 (/ISS)
P63326 (/ISS)
(40 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
49 |
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
(39 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
44 |
F6U211 (/IDA)
F6U211 (/IDA)
F6U211 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
(34 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
38 |
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
(28 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
38 |
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
P46783 (/IDA)
(28 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
38 |
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
P46783 (/TAS)
(28 more) |
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
|
38 |
P46783 (/NAS)
P46783 (/NAS)
P46783 (/NAS)
P46783 (/NAS)
P46783 (/NAS)
P46783 (/NAS)
P46783 (/NAS)
P46783 (/NAS)
P46783 (/NAS)
P46783 (/NAS)
(28 more) |
Focal adhesion GO:0005925
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
|
38 |
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
(28 more) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
38 |
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
(28 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
38 |
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
P46783 (/HDA)
(28 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
15 |
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
P46784 (/NAS)
Q08745 (/NAS)
Q08745 (/NAS)
(5 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
8 | O13614 (/ISO) O14112 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
6 | P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
6 | P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) P63325 (/ISO) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
5 | Q9FFS8 (/IDA) Q9FFS8 (/IDA) Q9LTF2 (/IDA) Q9LTF2 (/IDA) Q9SW09 (/IDA) |
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
4 | Q9FFS8 (/IDA) Q9FFS8 (/IDA) Q9LTF2 (/IDA) Q9LTF2 (/IDA) |
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
|
4 | Q9FFS8 (/IDA) Q9FFS8 (/IDA) Q9LTF2 (/IDA) Q9LTF2 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
3 | G4NC88 (/ISS) G4NC88 (/ISS) G4NC88 (/ISS) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
3 | Q9LTF2 (/IDA) Q9LTF2 (/IDA) Q9SW09 (/IDA) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
3 | G4NC88 (/ISS) G4NC88 (/ISS) G4NC88 (/ISS) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
3 | Q9VB14 (/TAS) Q9VWG3 (/TAS) Q9VWG3 (/TAS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | Q9VWG3 (/HDA) Q9VWG3 (/HDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
2 | O13614 (/HDA) O14112 (/HDA) |
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
|
2 | Q9FFS8 (/IDA) Q9FFS8 (/IDA) |
Cell surface GO:0009986
The external part of the cell wall and/or plasma membrane.
|
2 | A0A1D8PI15 (/IDA) A0A1D8PI15 (/IDA) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
2 | Q9VWG3 (/HDA) Q9VWG3 (/HDA) |