CATH Superfamily 1.10.10.10
Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain
".
FunFam 140: Histone H1.0
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 8 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
14 |
P02255 (/IPI)
P02255 (/IPI)
P07305 (/IPI)
P07305 (/IPI)
P07305 (/IPI)
P07305 (/IPI)
P07305 (/IPI)
P07305 (/IPI)
P07305 (/IPI)
P07305 (/IPI)
(4 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
12 |
P07305 (/HDA)
P07305 (/HDA)
P07305 (/HDA)
P07305 (/HDA)
P07305 (/HDA)
P07305 (/HDA)
P07305 (/HDA)
P07305 (/HDA)
P07305 (/HDA)
P07305 (/HDA)
(2 more) |
Chromatin DNA binding GO:0031490
Interacting selectively and non-covalently with DNA that is assembled into chromatin.
|
12 |
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
(2 more) |
Chromatin DNA binding GO:0031490
Interacting selectively and non-covalently with DNA that is assembled into chromatin.
|
6 | P02255 (/ISS) P02255 (/ISS) Q4AB54 (/ISS) Q4AB94 (/ISS) Q4ABD8 (/ISS) Q4ABE3 (/ISS) |
AT DNA binding GO:0003680
Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA).
|
1 | P10922 (/IMP) |
Double-stranded DNA binding GO:0003690
Interacting selectively and non-covalently with double-stranded DNA.
|
1 | P10922 (/IMP) |
Chromatin DNA binding GO:0031490
Interacting selectively and non-covalently with DNA that is assembled into chromatin.
|
1 | P10922 (/ISO) |
Nucleosomal DNA binding GO:0031492
Interacting selectively and non-covalently with the DNA portion of a nucleosome.
|
1 | P02259 (/IMP) |
There are 17 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
12 |
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
(2 more) |
Apoptotic DNA fragmentation GO:0006309
The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments.
|
12 |
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
(2 more) |
Chromatin silencing GO:0006342
Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin.
|
12 |
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
P07305 (/IGI)
(2 more) |
Positive regulation of transcription regulatory region DNA binding GO:2000679
Any process that activates or increases the frequency, rate or extent of transcription regulatory region DNA binding.
|
12 |
P07305 (/IMP)
P07305 (/IMP)
P07305 (/IMP)
P07305 (/IMP)
P07305 (/IMP)
P07305 (/IMP)
P07305 (/IMP)
P07305 (/IMP)
P07305 (/IMP)
P07305 (/IMP)
(2 more) |
Chromatin silencing GO:0006342
Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin.
|
2 | P02255 (/IMP) P02255 (/IMP) |
Negative regulation of histone modification GO:0031057
Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent alteration of a histone.
|
2 | P02255 (/IDA) P02255 (/IDA) |
Chromosome organization GO:0051276
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.
|
2 | P02255 (/IMP) P02255 (/IMP) |
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
1 | P10922 (/ISO) |
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
|
1 | P02259 (/IMP) |
Nucleosome assembly GO:0006334
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
|
1 | P02259 (/IMP) |
Chromatin silencing GO:0006342
Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin.
|
1 | P10922 (/ISO) |
Body morphogenesis GO:0010171
The process in which the anatomical structures of the soma are generated and organized.
|
1 | Q18336 (/IMP) |
Oviposition GO:0018991
The deposition of eggs (either fertilized or not) upon a surface or into a medium such as water.
|
1 | Q18336 (/IMP) |
Multicellular organism growth GO:0035264
The increase in size or mass of an entire multicellular organism, as opposed to cell growth.
|
1 | Q18336 (/IMP) |
Locomotion GO:0040011
Self-propelled movement of a cell or organism from one location to another.
|
1 | Q18336 (/IMP) |
Pharynx development GO:0060465
The biological process whose specific outcome is the progression of a pharynx from an initial condition to its mature state. The pharynx is the part of the digestive system immediately posterior to the mouth.
|
1 | Q18336 (/IMP) |
Positive regulation of transcription regulatory region DNA binding GO:2000679
Any process that activates or increases the frequency, rate or extent of transcription regulatory region DNA binding.
|
1 | P10922 (/ISO) |
There are 22 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
16 |
P02259 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
(6 more) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
12 |
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
(2 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
12 |
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
P07305 (/TAS)
(2 more) |
Nuclear euchromatin GO:0005719
The dispersed less dense form of chromatin in the interphase nucleus. It exists in at least two forms, a some being in the form of transcriptionally active chromatin which is the least condensed, while the rest is inactive euchromatin which is more condensed than active chromatin but less condensed than heterochromatin.
|
12 |
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
(2 more) |
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
|
12 |
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
(2 more) |
Actin cytoskeleton GO:0015629
The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
|
12 |
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
(2 more) |
Nuclear body GO:0016604
Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
|
12 |
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
(2 more) |
Transcriptional repressor complex GO:0017053
A protein complex that possesses activity that prevents or downregulates transcription.
|
12 |
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
P07305 (/IDA)
(2 more) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
6 | P02255 (/ISS) P02255 (/ISS) Q4AB54 (/ISS) Q4AB94 (/ISS) Q4ABD8 (/ISS) Q4ABE3 (/ISS) |
Nuclear chromosome, telomeric region GO:0000784
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
|
1 | P10771 (/IDA) |
Nucleosome GO:0000786
A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
|
1 | P02259 (/IDA) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
1 | P10922 (/ISO) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | P10922 (/ISO) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | G1NRW6 (/ISS) |
Nuclear euchromatin GO:0005719
The dispersed less dense form of chromatin in the interphase nucleus. It exists in at least two forms, a some being in the form of transcriptionally active chromatin which is the least condensed, while the rest is inactive euchromatin which is more condensed than active chromatin but less condensed than heterochromatin.
|
1 | P10922 (/ISO) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
1 | Q18336 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | P10771 (/IDA) |
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
|
1 | P10922 (/ISO) |
Actin cytoskeleton GO:0015629
The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
|
1 | P10922 (/ISO) |
Nuclear body GO:0016604
Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
|
1 | P10922 (/ISO) |
Transcriptional repressor complex GO:0017053
A protein complex that possesses activity that prevents or downregulates transcription.
|
1 | P10922 (/ISO) |
Intermediate filament cytoskeleton GO:0045111
Cytoskeletal structure made from intermediate filaments, typically organized in the cytosol as an extended system that stretches from the nuclear envelope to the plasma membrane. Some intermediate filaments run parallel to the cell surface, while others traverse the cytosol; together they form an internal framework that helps support the shape and resilience of the cell.
|
1 | Q18336 (/IDA) |