CATH Classification
Level | CATH Code | Description |
---|---|---|
3 | Alpha Beta | |
3.40 | 3-Layer(aba) Sandwich | |
3.40.640 | Aspartate Aminotransferase; domain 2 | |
3.40.640.10 | Type I PLP-dependent aspartate aminotransferase-like (Major domain) |
Domain Context
CATH Clusters
Superfamily | Type I PLP-dependent aspartate aminotransferase-like (Major domain) |
Functional Family |
Enzyme Information
4.2.1.168 |
GDP-4-dehydro-6-deoxy-alpha-D-mannose 3-dehydratase.
based on mapping to UniProt Q9F118
GDP-4-dehydro-alpha-D-rhamnose + L-glutamate = GDP-4-dehydro-3,6-dideoxy- alpha-D-mannose + 2-oxoglutarate + ammonia.
-!- This enzyme, involved in beta-L-colitose biosynthesis, is a unique vitamin-B6-dependent enzyme. -!- In the first step of catalysis, the bound pyridoxal phosphate (PLP) cafactor is transaminated to the pyridoxamine 5'-phosphate (PMP) form of vitamin B(6), using L-glutamate as the amino group donor. -!- The PMP cofactor then forms a Schiff base with the sugar substrate and the resulting adduct undergoes a 1,4-dehydration to eliminate the 3-OH group. -!- Hydrolysis of the product from the enzyme restores the PLP cofactor and results in the release of an unstable enamine intermediate. -!- This intermediate tautomerizes to form an imine form, which hydrolyzes spontaneously, releasing ammonia and forming the final product.
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UniProtKB Entries (1)
Q9F118 |
Q9F118_ECOLX
Escherichia coli
DegT/DnrJ/EryC1/StrS family aminotransferase
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PDB Structure
PDB | 2R0T |
External Links | |
Method | X-RAY DIFFRACTION |
Organism | Escherichia |
Primary Citation |
A Structural Study of GDP-4-Keto-6-Deoxy-d-Mannose-3-Dehydratase:
Caught in the Act of Geminal Diamine Formation
Biochemistry
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