CATH Classification
| Level | CATH Code | Description | 
|---|---|---|
|   | 3 | Alpha Beta | 
|   | 3.10 | Roll | 
|   | 3.10.28 | Endonuclease I-creI | 
|   | 3.10.28.10 | Homing endonucleases | 
Domain Context
CATH Clusters
| Superfamily | Homing endonucleases | 
| Functional Family | Vitamin B12-dependent ribonucleotide reductase | 
Enzyme Information
| 1.17.4.1 | Ribonucleoside-diphosphate reductase. based on mapping to UniProt E7FHX6 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H(2)O = ribonucleoside diphosphate + thioredoxin. -!- This enzyme is responsible for the de novo conversion of ribonucleoside diphosphates into deoxyribonucleoside diphosphates, which are essential for DNA synthesis and repair. -!- There are three types of this enzyme differing in their cofactors. -!- Class Ia enzymes contain a diiron(III)-tyrosyl radical, class Ib enzymes contain a dimanganese-tyrosyl radical, and class II enzymes contain adenosylcobalamin. -!- In all cases the cofactors are involved in generation of a transient thiyl (sulfanyl) radical on a cysteine residue, which attacks the substrate, forming a ribonucleotide 3'-radical, followed by water loss to form a ketyl (alpha-oxoalkyl) radical. -!- The ketyl radical is reduced to 3'-keto-deoxynucleotide concomitant with formation of a disulfide anion radical between two cysteine residues. -!- A proton-coupled electron-transfer from the disulfide radical to the substrate generates a 3'-deoxynucleotide radical, and the the final product is formed when the hydrogen atom that was initially removed from the 3'-position of the nucleotide by the thiyl radical is returned to the same position. -!- The disulfide bridge is reduced by the action of thioredoxin. -!- Cf. EC 1.1.98.6 and EC 1.17.4.2. | 
| 3.1.-.- | Acting on ester bonds. based on mapping to UniProt E7FHX6 | 
UniProtKB Entries (1)
| E7FHX6 | NDRZ_PYRFU Pyrococcus furiosus DSM 3638 Vitamin B12-dependent ribonucleoside-diphosphate reductase | 
PDB Structure
| PDB | 1DQ3 | 
| External Links | |
| Method | X-RAY DIFFRACTION | 
| Organism | Escherichia | 
| Primary Citation | Crystal structure of an archaeal intein-encoded homing endonuclease PI-PfuI. J.Mol.Biol. | 
