PDB 5hkv

PDB Links
Overview

PDB Information

PDB	5HKV
Method	X-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation	Structural insights of lincosamides targeting the ribosome of Staphylococcus aureus. Matzov, D., Eyal, Z., Benhamou, R.I., Shalev-Benami, M., Halfon, Y., Krupkin, M., Zimmerman, E., Rozenberg, H., Bashan, A., Fridman, M., Yonath, A. Nucleic Acids Res.
Header	Ribosome
Released	2016-01-14
Resolution	3.660
CATH Insert Date	14 May, 2017

PDB Images (54)

5hkv

PDB 5hkv

5hkv2

PDB Chain 5hkv2

5hkv3

PDB Chain 5hkv3

5hkvA

PDB Chain 5hkvA

5hkvB

PDB Chain 5hkvB

5hkvC

PDB Chain 5hkvC

5hkvD

PDB Chain 5hkvD

5hkvE

PDB Chain 5hkvE

5hkvG

PDB Chain 5hkvG

5hkvH

PDB Chain 5hkvH

5hkvI

PDB Chain 5hkvI

5hkvJ

PDB Chain 5hkvJ

5hkvK

PDB Chain 5hkvK

5hkvL

PDB Chain 5hkvL

5hkvM

PDB Chain 5hkvM

5hkvN

PDB Chain 5hkvN

5hkvO

PDB Chain 5hkvO

5hkvP

PDB Chain 5hkvP

5hkvQ

PDB Chain 5hkvQ

5hkvR

PDB Chain 5hkvR

5hkvS

PDB Chain 5hkvS

5hkvT

PDB Chain 5hkvT

5hkvU

PDB Chain 5hkvU

5hkvV

PDB Chain 5hkvV

5hkvW

PDB Chain 5hkvW

5hkvX

PDB Chain 5hkvX

5hkvY

PDB Chain 5hkvY

5hkvZ

PDB Chain 5hkvZ

5hkv200

CATH Domain 5hkv200

5hkv300

CATH Domain 5hkv300

5hkvA01

CATH Domain 5hkvA01

5hkvA02

CATH Domain 5hkvA02

5hkvA03

CATH Domain 5hkvA03

5hkvB00

CATH Domain 5hkvB00

5hkvC00

CATH Domain 5hkvC00

5hkvD00

CATH Domain 5hkvD00

5hkvE01

CATH Domain 5hkvE01

5hkvE02

CATH Domain 5hkvE02

5hkvG00

CATH Domain 5hkvG00

5hkvH00

CATH Domain 5hkvH00

5hkvJ01

CATH Domain 5hkvJ01

5hkvK00

CATH Domain 5hkvK00

5hkvL01

CATH Domain 5hkvL01

5hkvM00

CATH Domain 5hkvM00

5hkvN00

CATH Domain 5hkvN00

5hkvO00

CATH Domain 5hkvO00

5hkvP00

CATH Domain 5hkvP00

5hkvQ00

CATH Domain 5hkvQ00

5hkvS01

CATH Domain 5hkvS01

5hkvS02

CATH Domain 5hkvS02

5hkvU00

CATH Domain 5hkvU00

5hkvV00

CATH Domain 5hkvV00

5hkvW00

CATH Domain 5hkvW00

5hkvZ01

CATH Domain 5hkvZ01

PDB Prints

PDB Chains (27)

Chain ID	Date inserted into CATH	CATH Status
2	15 May, 2017	Chopped
3	15 May, 2017	Chopped
A	15 May, 2017	Chopped
B	15 May, 2017	Chopped
C	15 May, 2017	Chopped
D	15 May, 2017	Chopped
E	15 May, 2017	Chopped
G	15 May, 2017	Chopped
H	15 May, 2017	Chopped
I	15 May, 2017	Holding pen
J	15 May, 2017	Chopped
K	15 May, 2017	Chopped
L	15 May, 2017	Chopped
M	15 May, 2017	Chopped
N	15 May, 2017	Chopped
O	15 May, 2017	Chopped
P	15 May, 2017	Chopped
Q	15 May, 2017	Chopped
R	15 May, 2017	Holding pen
S	15 May, 2017	Chopped
T	15 May, 2017	Holding pen
U	15 May, 2017	Chopped
V	15 May, 2017	Chopped
W	15 May, 2017	Chopped
X	15 May, 2017	Rejected
Y	15 May, 2017	Rejected
Z	15 May, 2017	Chopped

CATH Domains (26)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5hkv200	06 Nov, 2017	1.10.287.3980	Assigned
5hkv300	06 Nov, 2017		Holding pen
5hkvA01	12 Jul, 2018	2.40.50.140	Assigned
5hkvA02	12 Jul, 2018		Holding pen
5hkvA03	12 Jul, 2018	4.10.950.10	Assigned
5hkvB00	06 Nov, 2017		Holding pen
5hkvC00	06 Nov, 2017		Holding pen
5hkvD00	14 Dec, 2017	3.30.1440.10	Assigned
5hkvE01	06 Nov, 2017	3.90.930.12	Assigned
5hkvE02	06 Nov, 2017	3.90.930.12	Assigned
5hkvG00	14 Dec, 2017		Holding pen
5hkvH00	06 Nov, 2017	2.40.150.20	Assigned
5hkvJ01	06 Nov, 2017	3.90.1170.10	Assigned
5hkvK00	06 Nov, 2017	3.90.1030.10	Assigned
5hkvL01	06 Nov, 2017	3.30.420.100	Assigned
5hkvM00	06 Nov, 2017		Holding pen
5hkvN00	03 Nov, 2017		Holding pen
5hkvO00	06 Nov, 2017		Holding pen
5hkvP00	06 Nov, 2017	3.90.470.10	Assigned
5hkvQ00	06 Nov, 2017	3.30.70.330	Assigned
5hkvS01	03 Nov, 2017	2.40.240.10	Assigned
5hkvS02	03 Nov, 2017	2.170.120.20	Assigned
5hkvU00	06 Nov, 2017		Holding pen
5hkvV00	06 Nov, 2017		Holding pen
5hkvW00	06 Nov, 2017	3.30.1390.20	Assigned
5hkvZ01	03 Nov, 2017		Holding pen

UniProtKB Entries (23)

Accession	Gene ID	Taxon	Description
Q2FW08	RL23_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L23
Q2FW07	RL4_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L4
Q2FUQ0	RL34_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L34
Q2FW21	RL6_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L6
Q2FW38	RL13_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L13
Q2FW33	RL17_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L17
Q2FW06	RL3_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L3
Q2FZ42	RL19_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L19
P0A0F8	RL15_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L15
Q2FZ60	RL28_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L28
Q2FXQ0	RL35_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L35
P60430	RL2_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L2
Q2FW22	RL18_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L18
Q2FW14	RL29_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L29
Q2FW16	RL14_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L14
Q2FXQ1	RL20_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L20
Q2FW17	RL24_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L24
Q2FW18	RL5_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L5
Q2FW11	RL22_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L22
P0A0G2	RL30_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L30
Q2FXT0	RL27_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L27
Q2FW13	RL16_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L16
Q2G0S0	Q2G0S0_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L25