CATH Superfamily 2.30.30.140
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 38: Survival of motor neuron-related-splicing factor 3...
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 6 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
4 | O75940 (/IPI) P97801 (/IPI) P97801 (/IPI) Q16637 (/IPI) |
Fibroblast growth factor binding GO:0017134
Interacting selectively and non-covalently with a fibroblast growth factor.
|
2 | P97801 (/ISO) P97801 (/ISO) |
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
2 | P97801 (/ISO) P97801 (/ISO) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
1 | O75940 (/HDA) |
Fibroblast growth factor binding GO:0017134
Interacting selectively and non-covalently with a fibroblast growth factor.
|
1 | O35876 (/IPI) |
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
1 | Q16637 (/IPI) |
Showing 1 to 6 of 6 entries
There are 29 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
|
10 | O02771 (/ISS) O18870 (/ISS) O35876 (/ISS) P97801 (/ISS) P97801 (/ISS) Q4R4F8 (/ISS) Q4R4F8 (/ISS) Q5RE18 (/ISS) Q5RE18 (/ISS) Q8HYB8 (/ISS) |
DNA-templated transcription, termination GO:0006353
The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
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10 | O02771 (/ISS) O18870 (/ISS) O35876 (/ISS) P97801 (/ISS) P97801 (/ISS) Q4R4F8 (/ISS) Q4R4F8 (/ISS) Q5RE18 (/ISS) Q5RE18 (/ISS) Q8HYB8 (/ISS) |
Axonogenesis GO:0007409
De novo generation of a long process of a neuron, including the terminal branched region. Refers to the morphogenesis or creation of shape or form of the developing axon, which carries efferent (outgoing) action potentials from the cell body towards target cells.
|
3 | P97801 (/IMP) P97801 (/IMP) Q9W6S8 (/IMP) |
Microtubule depolymerization GO:0007019
The removal of tubulin heterodimers from one or both ends of a microtubule.
|
2 | P97801 (/IMP) P97801 (/IMP) |
Regulation of neuron projection development GO:0010975
Any process that modulates the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
|
2 | P97801 (/IGI) P97801 (/IGI) |
Positive regulation of RNA splicing GO:0033120
Any process that activates or increases the frequency, rate or extent of RNA splicing.
|
2 | P97801 (/IMP) P97801 (/IMP) |
Spliceosomal complex assembly GO:0000245
The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions.
|
1 | Q16637 (/IMP) |
Spliceosomal complex assembly GO:0000245
The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions.
|
1 | Q16637 (/NAS) |
RNA splicing, via transesterification reactions GO:0000375
Splicing of RNA via a series of two transesterification reactions.
|
1 | O75940 (/TAS) |
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
|
1 | Q16637 (/IDA) |
Showing 1 to 10 of 29 entries
There are 39 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
11 |
O02771 (/ISS)
O18870 (/ISS)
O35876 (/ISS)
P97801 (/ISS)
P97801 (/ISS)
Q4R4F8 (/ISS)
Q4R4F8 (/ISS)
Q5RE18 (/ISS)
Q5RE18 (/ISS)
Q8HYB8 (/ISS)
(1 more) |
Cajal body GO:0015030
A class of nuclear body, first seen after silver staining by Ramon y Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA.
|
11 |
O02771 (/ISS)
O18870 (/ISS)
O35876 (/ISS)
P97801 (/ISS)
P97801 (/ISS)
Q4R4F8 (/ISS)
Q4R4F8 (/ISS)
Q5RE18 (/ISS)
Q5RE18 (/ISS)
Q8HYB8 (/ISS)
(1 more) |
SMN complex GO:0032797
A protein complex that contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and Unrip proteins; the complex is found in the cytoplasm and in nuclear Gems, and is involved in spliceosomal snRNP assembly in the cytoplasm and in pre-mRNA splicing in the nucleus.
|
11 |
O02771 (/ISS)
O18870 (/ISS)
O35876 (/ISS)
P97801 (/ISS)
P97801 (/ISS)
Q4R4F8 (/ISS)
Q4R4F8 (/ISS)
Q5RE18 (/ISS)
Q5RE18 (/ISS)
Q8HYB8 (/ISS)
(1 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
10 | O02771 (/ISS) O18870 (/ISS) O35876 (/ISS) P97801 (/ISS) P97801 (/ISS) Q4R4F8 (/ISS) Q4R4F8 (/ISS) Q5RE18 (/ISS) Q5RE18 (/ISS) Q8HYB8 (/ISS) |
SMN-Sm protein complex GO:0034719
A protein complex formed by the association of several methylated Sm proteins with the SMN complex; the latter contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and unrip proteins; additional proteins, including galectin-1 and galectin-3, are also found in the SMN-SM complex. The SMN-Sm complex is involved in spliceosomal snRNP assembly in the cytoplasm.
|
10 | O02771 (/ISS) O18870 (/ISS) O35876 (/ISS) P97801 (/ISS) P97801 (/ISS) Q4R4F8 (/ISS) Q4R4F8 (/ISS) Q5RE18 (/ISS) Q5RE18 (/ISS) Q8HYB8 (/ISS) |
Cytoplasmic ribonucleoprotein granule GO:0036464
A ribonucleoprotein granule located in the cytoplasm.
|
10 | O02771 (/ISS) O18870 (/ISS) O35876 (/ISS) P97801 (/ISS) P97801 (/ISS) Q4R4F8 (/ISS) Q4R4F8 (/ISS) Q5RE18 (/ISS) Q5RE18 (/ISS) Q9W6S8 (/ISS) |
Neuron projection GO:0043005
A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
|
10 | O02771 (/ISS) O18870 (/ISS) O35876 (/ISS) P97801 (/ISS) P97801 (/ISS) Q4R4F8 (/ISS) Q4R4F8 (/ISS) Q5RE18 (/ISS) Q5RE18 (/ISS) Q9W6S8 (/ISS) |
Perikaryon GO:0043204
The portion of the cell soma (neuronal cell body) that excludes the nucleus.
|
10 | O02771 (/ISS) O18870 (/ISS) O35876 (/ISS) P97801 (/ISS) P97801 (/ISS) Q4R4F8 (/ISS) Q4R4F8 (/ISS) Q5RE18 (/ISS) Q5RE18 (/ISS) Q9W6S8 (/ISS) |
Gemini of coiled bodies GO:0097504
Nuclear bodies frequently found near or associated with Cajal bodies (also called coiled bodies or CBs). Gemini of coiled bodies, or 'gems', are similar in size and shape to CBs, and often indistinguishable under the microscope. Unlike CBs, gems do not contain small nuclear ribonucleoproteins (snRNPs); they contain a protein called survivor of motor neurons (SMN) whose function relates to snRNP biogenesis. Gems are believed to assist CBs in snRNP biogenesis, and to play a role in the etiology of spinal muscular atrophy (SMA).
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10 | O02771 (/ISS) O18870 (/ISS) P97801 (/ISS) P97801 (/ISS) Q4R4F8 (/ISS) Q4R4F8 (/ISS) Q5RE18 (/ISS) Q5RE18 (/ISS) Q8HYB8 (/ISS) Q9W6S8 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
9 | O02771 (/ISS) O18870 (/ISS) O35876 (/ISS) Q4R4F8 (/ISS) Q4R4F8 (/ISS) Q5RE18 (/ISS) Q5RE18 (/ISS) Q8HYB8 (/ISS) Q9W6S8 (/ISS) |
Showing 1 to 10 of 39 entries