CATH Superfamily 2.30.30.140

Browse Functional Families

ID	Function Family (FunFam) Name	Total Sequences	Structure?	Structural Representative	PDB Sites?	Alignment Diversity (0-100)
1	Fragile X mental retardation 1, isoform CRA_e	774	3D	2bkdN02	-	89.4
2	Fragile X mental retardation 1, isoform CRA_e	715	3D	4qw2B01	-	93.8
3	Protein kinase C-binding protein 1 isoform C	652		-	-	42.0
5	Putative lysine-specific demethylase 4a	618	3D	5varA01	-	97.7
4	Histone-lysine N-methyltransferase	597	3D	2daqA00	-	87.6
7	Lethal 3	578	3D	3uwnA03	-	83.2
6	DNA Cytosine-5	547	3D	1khcA01	-	76.2
8	Bromodomain containing 1, isoform CRA_b	516	3D	5c6sA01	-	84.7
9	AT-rich interactive domain-containing protein 4B	493	3D	2mamA00	-	77.4
10	MBT domain-containing protein 1 isoform X1	480	3D	4c5hA03	-	93.1
11	Zinc finger MYND domain-containing protein 11	410	3D	4ns5A02	-	53.0
12	AT-rich interactive domain-containing protein 4A	384	3D	6bphA00	-	83.4
13	Histone acetyltransferase	347	3D	4qqgG00	-	94.9
15	MBT domain-containing protein 1 isoform X1	342	3D	4c5hA01	-	77.6
16	polycomb protein SCMH1 isoform X1	331	3D	2r5mA02	-	59.7
17	hepatoma-derived growth factor isoform X1	329	3D	2nluB00	-	90.8
14	Metal-response element-binding transcription factor 2	328	3D	2eqjA00	-	75.4
21	Tumor suppressor p53-binding protein 1	323	3D	1ssfA01	-	96.0
18	Serine/threonine-protein kinase 31	314	3D	2wacB02	-	99.5
19	MBT domain-containing protein 1 isoform X1	307	3D	4c5hA02	-	77.4
20	RNA polymerase-associated protein RapA	295	3D	6bogB01	-	61.1
22	Hydrogenase assembly chaperone HybG	295	3D	3vyrA00	-	86.8
25	Lethal 3	284	3D	3uwnA01	-	76.9
23	Hydrogenase assembly chaperone protein HypC	283	3D	2ot2A01	-	18.7
24	Mortality factor 4-like protein 1	274	3D	2efiA00	-	94.0
28	polycomb protein SCMH1 isoform X1	226	3D	2r5mA01	-	80.8
26	SAGA-associated factor 29 homolog	225	3D	3lx7A01	-	95.3
29	SAGA-associated factor 29 homolog	224	3D	5c0mB02	-	92.8
27	putative oxidoreductase GLYR1 isoform X1	218		-	-	60.4
32	MBT domain-containing protein 1 isoform X1	211	3D	3f70B04	-	62.9
30	Histone-lysine N-methyltransferase	205		-	-	69.5
31	DNA/RNA-binding protein KIN17 isoform X1	204	3D	2ckkA01	-	84.0
33	Binding protein	195		-	-	88.7
34	Histone-lysine N-methyltransferase	184		-	-	75.7
37	Histone-lysine N-methyltransferase	175	3D	6bhiA03	-	65.9
35	Methyl-CpG binding domain protein 5	171		-	-	69.4
38	Survival of motor neuron-related-splicing factor 30	168	3D	4qq6A00	-	77.1
36	PWWP domain-containing protein 2A	163	3D	4ld6A00	-	87.0
39	Histone acetyltransferase	162	3D	1wgsA00	-	86.2
42	male-specific lethal 3 homolog	162	3D	3m9qB00	-	90.5
40	PHD finger protein 1 isoform X1	161	3D	2m0oA00	-	32.7
41	Scm-like with four mbt domains 1, isoform CRA_b	154		-	-	63.2
46	tudor domain-containing protein 3 isoform X1	147	3D	5yj8A00	-	65.1
43	PHD finger protein 20 Predicted	141	3D	3qiiA00	-	58.9
47	Staphylococcal nuclease domain-containing protein	141	3D	5m9oA02	-	79.7
44	AT-rich interactive domain-containing protein 4B isoform X1	138		-	-	76.3
45	tudor domain-containing protein 7 isoform X1	137		-	-	72.0
49	PHD finger protein 20 Predicted	129	3D	3sd4B00	-	65.2
48	Tudor domain containing 1	127		-	-	78.7
54	Histone-lysine N-methyltransferase	126	3D	6bhiA01	-	49.8
50	AT-rich interactive domain 4A RBP1-like	125	3D	2yrvA01	-	72.7
51	Tudor domain-containing protein 5	123		-	-	72.2
52	SAGA-associated factor 29 isoform X6	116		-	-	75.8
55	SAGA complex component	115	3D	3mp8A05	-	80.7
53	tudor domain-containing protein 7 isoform X2	113		-	-	72.0
56	DNA/RNA-binding protein kin17-like	107		-	-	75.7
57	Histone-lysine N-methyltransferase NSD2	107		-	-	88.4
58	Lamin B receptor	104	3D	2digA00	-	90.4
59	Histone-lysine N-methyltransferase	100		-	-	89.2
60	Scm-like with four mbt domains 1, isoform CRA_b	98		-	-	54.3
61	SAGA-associated factor 29 isoform X6	90		-	-	92.2
63	PWWP domain-containing DNA repair factor 3A	90	3D	3pmiD01	-	76.1
68	E3 ubiquitin-protein ligase UHRF1 isoform 1	89	3D	5iayA01	-	82.0
62	trinucleotide repeat-containing gene 18 protein-like	87		-	-	19.1
64	Tudor domain containing 6	84		-	-	48.8
65	tudor domain-containing protein 7	83		-	-	94.4
66	A-kinase anchor protein 1, mitochondrial	82		-	-	28.0
71	Zinc finger CCCH-type with G patch domain-containing protein	77	3D	4ii1D02	-	71.3
67	Histone acetyltransferase	77		-	-	77.6
69	DNA mismatch repair protein	75	3D	2gfuA00	-	74.8
70	Scm like with four mbt domains 2	75	3D	1wjrA00	-	44.1
72	Scm like with four mbt domains 2	71		-	-	72.9
74	E3 ubiquitin-protein ligase UHRF2 isoform X1	70		-	-	56.8
73	ATP-dependent RNA helicase TDRD9	70		-	-	88.3
75	putative ATP-dependent RNA helicase TDRD12	63		-	-	91.8
76	RING finger protein 17	62		-	-	41.6
77	Chromatin modification-related protein eaf3	61		-	-	51.5
78	HypC/HybG/HupF family hydrogenase formation chaperone	60		-	-	11.0
80	Fragile X mental retardation protein 1 B	57		-	-	71.6
79	Enhancer of polycomb-like transcription factor protein	57		-	-	81.2
81	Tudor domain-containing protein 1	56	3D	4b9xA02	-	73.4
82	Fragile X mental retardation syndrome-related protein 1	52	3D	3o8vA02	-	37.3
84	Tudor and KH domain-containing protein	50	3D	5j39B02	-	71.8
83	Tudor domain containing 6	48		-	-	31.7
85	Tudor domain-containing protein 6	37		-	-	65.3
86	PHD finger protein 1	35		-	-	21.6
87	Putative ATP-dependent RNA helicase TDRD12	35		-	-	87.6
88	Protein EMSY-LIKE 3	32		-	-	75.5
89	Male-specific lethal 3	31		-	-	25.7
91	Tudor domain-containing protein 1	30		-	-	70.6
92	DNA/RNA-binding protein KIN17	30		-	-	89.5
90	Tudor domain-containing protein 6	30		-	-	45.0
93	DNA mismatch repair protein	28		-	-	82.1
94	Histone-lysine N-methyltransferase	27		-	-	58.5
95	tudor domain-containing protein 6 isoform X1	27		-	-	35.4
96	Tudor domain containing 6	24		-	-	36.3
97	AT-rich interactive domain-containing protein 4B	23		-	-	63.0
99	Histone-lysine N-methyltransferase	21		-	-	95.3
98	Uncharacterized protein, isoform B	21		-	-	20.2
102	Protein MRG1	19		-	-	70.1
100	E3 ubiquitin-protein ligase UHRF2 isoform X2	19		-	-	46.2
103	Fmr1, isoform J	19		-	-	91.1
101	DNA/RNA-binding protein KIN17	19		-	-	4.7
104	Unplaced genomic scaffold supercont2.8, whole genome shotgun sequence	18		-	-	70.2
123	Chromatin modification-related protein EAF3	18	3D	3e9gB01	-	53.2
105	R-interacting factor1	17		-	-	54.6
106	Histone acetyltransferase	17		-	-	10.3
107	Six-banded, isoform H	16		-	-	78.9
112	SAGA-associated factor 29	15		-	-	30.7
111	Histone acetyltransferase SAGA associated factor SGF29	15		-	-	18.3
113	SAGA-associated factor 29 protein	15		-	-	71.8
110	Survival motor neuron-like protein	15		-	-	6.3
108	Histone-lysine N-methyltransferase	15		-	-	55.2
120	PWWP domain-containing protein2	15	3D	2l89A00	-	90.3
109	Histone-lysine N-methyltransferase	15		-	-	63.7
114	RING finger protein 17	15		-	-	97.2
116	Os04g0326000 protein	14		-	-	6.2
115	Tudor/PWWP/MBT superfamily protein	14		-	-	70.4
129	NuA4 complex subunit EAF3 homolog	13	3D	2lrqA00	-	81.8
124	Nuclease domain-containing protein 1	13		-	-	51.8
119	Ubiquitin carboxyl-terminal hydrolase 34	13		-	-	8.2
125	Predicted protein	13		-	-	84.3
118	E3 ubiquitin-protein ligase UHRF2	13		-	-	10.4
117	Glyoxylate reductase 1 homolog	13		-	-	24.0
121	Pre-mRNA-splicing factor 38B, putative	13		-	-	28.3
122	Unplaced genomic scaffold supercont2.16, whole genome shotgun sequence	13		-	-	52.4
128	NAD P	12		-	-	13.6
141	DNA damage repair protein Rad9	12	3D	2fhdC01	-	88.3
126	tudor domain-containing protein 6	12		-	-	36.2
127	YLR455W-like protein	12		-	-	16.4
132	Histone acetyltransferase	11		-	-	14.2
131	Histone acetyltransferase	11		-	-	34.0
133	Fmr1, isoform G	11		-	-	11.6
130	Uncharacterized protein, isoform B	11		-	-	21.4
304	Protein SAWADEE HOMEODOMAIN HOMOLOG 1	11	3D	4iuvB02	-	0.0
139	Histone acetyltransferase	10		-	-	26.6
134	C.Elegans Chromodomain protein	10		-	-	47.8
136	Uncharacterized protein, isoform A	10		-	-	19.5
137	Protein MOS2	10		-	-	17.9
135	Metal-response element-binding transcription factor	10		-	-	53.0
138	Chromosome 1, whole genome shotgun sequence	10		-	-	26.0
140	MRG Mortality factor-Related Gene	10		-	-	81.8
142	Ribonuclease	9		-	-	0.0
144	DNA mismatch repair protein	9		-	-	64.8
143	SAGA-associated factor 29	9		-	-	13.9
172	Maternal protein tudor	9	3D	3ntkB02	-	23.1
149	WGS project CABT00000000 data, contig 2.3	8		-	-	80.3
148	Hydrogenase expression/formation protein HupF	8		-	-	27.5
147	Transcription elongation factor-like protein	8		-	-	13.5
145	Predicted protein	8		-	-	65.5
146	Ubiquitin like with PHD and ring finger domains 2	8		-	-	6.6
160	Maternal protein tudor	8	3D	4q5wB02	-	11.4
150	Chromosome 1, whole genome shotgun sequence	8		-	-	19.4
156	Histone acetyltransferase	7		-	-	91.2
153	GM26024	7		-	-	23.4
155	Histone acetyltransferase	7		-	-	85.0
154	Histone acetyltransferase	7		-	-	66.7
152	GM14014p	7		-	-	7.7
151	Tapas, isoform B	7		-	-	6.3
158	maternal protein tudor	6		-	-	16.3
157	Histone-lysine N-methyltransferase	6		-	-	38.1
163	Histone acetyltransferase	6		-	-	4.7
161	Polycomblike, isoform B	6		-	-	5.4
159	GM21401	6		-	-	8.8
162	Uncharacterized protein, isoform A	6		-	-	4.4
170	DNA cytosine-5-	5		-	-	0.0
165	Tudor, isoform B	5		-	-	1.4
168	Qin	5		-	-	14.3
178	Predicted protein	5		-	-	87.7
177	Histone acetyltransferase	5		-	-	62.5
171	PHD finger protein 1	5		-	-	2.3
176	Protein CBG17113	5		-	-	91.6
166	Probable ATP-dependent RNA helicase spindle-E	5		-	-	13.2
175	Histone acetyltransferase	5		-	-	13.4
174	GD18427	5		-	-	19.5
164	Uncharacterized protein	5		-	-	45.8
167	MBD-R2	5		-	-	3.3
173	GM24389	5		-	-	8.2
169	DNA cytosine-5-	5		-	-	1.7
191	T17B22.17 protein	4		-	-	12.9
184	Tudor, isoform B	4		-	-	10.8
181	Ubiquitin family, putative	4		-	-	46.4
192	Histone acetyltransferase	4		-	-	4.8
183	GD19236	4		-	-	11.0
179	E3 ubiquitin-protein ligase UHRF1	4		-	-	17.2
193	Os11g0545600 protein	4		-	-	8.4
186	Acylphosphatase	4		-	-	0.0
194	Uncharacterized protein	4		-	-	87.8
185	RING finger protein 17	4		-	-	15.7
180	G-patch domain and KOW motifs-containing protein	4		-	-	25.9
187	Tudor domain-containing 12	4		-	-	5.0
195	SGF29 tudor-like domain-domain-containing protein	4		-	-	84.2
188	Tapas, isoform B	4		-	-	0.0
189	maternal protein tudor	4		-	-	14.0
182	Transcription factor, Tudor domain, putative	4		-	-	60.7
190	Pro-Pol polyprotein	4		-	-	8.8
207	Tudor/PWWP/MBT superfamily protein	3		-	-	11.3
209	Histone acetyltransferase	3		-	-	36.2
199	Tudor, isoform B	3		-	-	7.2
204	Uncharacterized protein R102.4-like Protein	3		-	-	0.0
205	Lysine-specific demethylase 4C	3		-	-	4.8
214	Os04g0101300 protein	3		-	-	0.9
196	Predicted protein	3		-	-	43.4
215	Chromatin modification-related protein EAF3	3		-	-	7.1
212	Chromatin modification-related protein EAF3	3		-	-	23.4
198	RING finger protein 17	3		-	-	8.8
202	Tudor, isoform B	3		-	-	0.0
210	Histone acetyltransferase	3		-	-	11.7
213	Uncharacterized protein	3		-	-	39.3
200	RING finger protein 17	3		-	-	13.0
203	Uncharacterized protein R102.4-like Protein	3		-	-	0.0
211	Histone acetyltransferase	3		-	-	11.2
206	Transcription elongation factor s-II	3		-	-	2.0
197	Uncharacterized protein	3		-	-	30.8
208	GM23618	3		-	-	10.9
201	Putative ATP-dependent RNA helicase SoYb	3		-	-	11.3
272	Retinoblastoma-binding protein	2		-	-	0.0
262	Histone acetyltransferase	2		-	-	0.0
232	FI02030p	2		-	-	0.0
225	YALI0B03960p	2		-	-	0.0
278	Predicted protein	2		-	-	42.4
222	Histone-lysine N-methyltransferase	2		-	-	11.2
217	E3 ubiquitin-protein ligase UHRF1-like Protein	2		-	-	39.5
252	Uncharacterized protein	2		-	-	4.0
224	Tudor, isoform B	2		-	-	0.0
263	Histone acetyltransferase esa1	2		-	-	0.0
267	Uncharacterized protein	2		-	-	45.1
233	Qin	2		-	-	0.0
273	Retinoblastoma-binding protein	2		-	-	0.0
253	Uncharacterized protein	2		-	-	0.0
258	SAGA-associated factor 29	2		-	-	0.0
248	Metal-response element-binding transcription factor 2	2		-	-	0.0
236	Tudor domain-containing protein 7	2		-	-	0.0
234	Hydrolase	2		-	-	1.6
260	Uncharacterized protein	2		-	-	0.0
227	Tapas, isoform A	2		-	-	0.0
264	Histone acetyltransferase	2		-	-	0.9
259	SGF29 tudor-like domain-containing protein	2		-	-	0.0
249	Putative serine/threonine-protein kinase pats1	2		-	-	0.0
226	RE70955p	2		-	-	0.0
244	ARID AT-rich Interactive Domain-containing protein	2		-	-	0.0
237	MutS 6 isoform 1 family protein	2		-	-	1.0
235	E3 ubiquitin-protein ligase UHRF2 isoform X2	2		-	-	1.6
265	Histone acetyltransferase ESA1	2		-	-	0.0
256	SAGA complex associated factor 29	2		-	-	34.4
270	Chromatin binding protein	2		-	-	6.7
261	Histone acetyltransferase	2		-	-	41.0
246	Uncharacterized protein	2		-	-	0.0
257	SAGA-associated factor 29	2		-	-	0.0
229	Bromodomain and PHD finger-containing, 3	2		-	-	0.0
247	Uncharacterized protein	2		-	-	3.8
271	Fragile X mental retardation syndrome-related protein 1-like Protein	2		-	-	0.0
242	Protein CBR-ARID-1	2		-	-	2.8
254	Histone acetyltransferase ESA1	2		-	-	6.9
243	Histone-lysine N-methyltransferase SETDB1-A	2		-	-	0.0
228	LD30829p	2		-	-	0.0
268	Chromatin modification-related protein EAF3	2		-	-	0.0
238	GM03859p	2		-	-	0.0
218	Enhanced RNAI RNA interference	2		-	-	48.2
221	glyoxylate/succinic semialdehyde reductase 1 isoform X2	2		-	-	0.0
255	Uncharacterized protein	2		-	-	47.1
274	Retinoblastoma-binding protein	2		-	-	0.0
250	Metal-response element-binding transcription factor 2	2		-	-	0.0
276	Uncharacterized protein	2		-	-	40.1
240	Putative serine/threonine-protein kinase pats1	2		-	-	1.8
230	Ubiquitin like with PHD and ring finger domains 2	2		-	-	12.6
239	Putative ATP-dependent RNA helicase TDRD12	2		-	-	0.0
269	Protein CBG13694	2		-	-	5.0
219	AT14886p	2		-	-	5.7
220	Enhanced RNAI RNA interference	2		-	-	46.9
275	SMN Human Survival Motor Neuron gene	2		-	-	0.0
251	Histone-lysine N-methyltransferase	2		-	-	0.0
245	Histone-lysine N-methyltransferase SETDB1-A	2		-	-	7.8
241	AGAP001019-PA	2		-	-	0.0
266	NuA4 complex subunit EAF3 homolog	2		-	-	26.3
231	Uncharacterized protein	2		-	-	0.0
223	Serine/threonine-protein kinase ATM	2		-	-	9.6
216	Uncharacterized protein	2		-	-	35.0
277	Protein CBG13704	2		-	-	11.7
350	Uncharacterized protein	1		-	-	0.0
311	Uncharacterized protein	1		-	-	0.0
294	Uncharacterized protein	1		-	-	0.0
326	Uncharacterized protein	1		-	-	0.0
335	Splicing factor spf30	1		-	-	0.0
305	Uncharacterized protein	1		-	-	0.0
281	Polypeptide N-acetylgalactosaminyltransferase	1		-	-	0.0
319	Uncharacterized protein	1		-	-	0.0
344	Histone acetyltransferase	1		-	-	0.0
336	Uncharacterized protein	1		-	-	0.0
351	Uncharacterized protein	1		-	-	0.0
329	Protein lin-61	1		-	-	0.0
346	Histone acetyltransferase	1		-	-	0.0
279	Probable histone-lysine N-methyltransferase Mes-4	1		-	-	0.0
293	Uncharacterized protein	1		-	-	0.0
310	Tudor domain containing protein	1		-	-	0.0
280	Protein CBR-RAD-54	1		-	-	0.0
334	Uncharacterized protein	1		-	-	0.0
345	Histone acetyltransferase	1		-	-	0.0
318	Uncharacterized protein	1		-	-	0.0
337	RE66405p	1		-	-	0.0
288	Histone acetyltransferase	1		-	-	0.0
320	Protein lin-61	1		-	-	0.0
338	RBB1NT NUC162	1		-	-	0.0
328	Histone-lysine N-methyltransferase	1		-	-	0.0
297	DNA mismatch repair protein	1		-	-	0.0
283	Histone-lysine N-methyltransferase	1		-	-	0.0
295	Protein lin-61	1		-	-	0.0
300	Predicted protein	1		-	-	0.0
296	Predicted protein	1		-	-	0.0
352	Predicted protein	1		-	-	0.0
343	Histone acetyltransferase	1		-	-	0.0
321	Transcription elongation factor S-II, putative	1		-	-	0.0
282	Uncharacterized protein	1		-	-	0.0
306	DNA mismatch repair protein	1		-	-	0.0
340	Predicted protein	1		-	-	0.0
285	Uncharacterized protein	1		-	-	0.0
308	Uncharacterized protein	1		-	-	0.0
301	Uncharacterized protein	1		-	-	0.0
349	Predicted protein	1		-	-	0.0
323	Uncharacterized protein	1		-	-	0.0
330	Bromodomain and PHD finger-containing, 3	1		-	-	0.0
353	Uncharacterized protein	1		-	-	0.0
307	Putative ATP-dependent RNA helicase TDRD12-like Protein	1		-	-	0.0
299	Suppressor of fused homolog-like Protein	1		-	-	0.0
315	Uncharacterized protein	1		-	-	0.0
317	Uncharacterized protein	1		-	-	0.0
284	Non-specific serine/threonine protein kinase	1		-	-	0.0
289	Uncharacterized protein	1		-	-	0.0
290	AT14886p	1		-	-	0.0
342	Uncharacterized protein	1		-	-	0.0
341	SAGA complex associated factor 29	1		-	-	0.0
309	DNA mismatch repair protein	1		-	-	0.0
322	Uncharacterized protein	1		-	-	0.0
316	Histone-lysine N-methyltransferase	1		-	-	0.0
314	Uncharacterized protein	1		-	-	0.0
302	Uncharacterized protein	1		-	-	0.0
298	Uncharacterized protein	1		-	-	0.0
339	RBB1NT NUC162	1		-	-	0.0
325	PHD finger protein 19	1		-	-	0.0
287	Uncharacterized protein	1		-	-	0.0
333	Uncharacterized protein	1		-	-	0.0
303	Uncharacterized protein	1		-	-	0.0
347	Histone acetyltransferase	1		-	-	0.0
313	Excision repair cross-complementation group 6-like 2	1		-	-	0.0
331	Uncharacterized protein	1		-	-	0.0
348	Chromatin modification-related protein EAF3	1		-	-	0.0
324	KIN17-like protein KLP	1		-	-	0.0
312	Uncharacterized protein	1		-	-	0.0
286	Histone-lysine N-methyltransferase	1		-	-	0.0
332	Sop-2-related protein 3	1		-	-	0.0
292	Probable ATP-dependent RNA helicase spindle-E	1		-	-	0.0
291	Uncharacterized protein	1		-	-	0.0
327	DNA mismatch repair protein	1		-	-	0.0