The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"RNA-binding S4 domain
".
FunFam 3: Pseudouridine synthase
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 5 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Pseudouridine synthase activity GO:0009982
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
|
80 |
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
(70 more) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
60 |
P37765 (/IPI)
P37765 (/IPI)
P37765 (/IPI)
P37765 (/IPI)
P37765 (/IPI)
P37765 (/IPI)
P37765 (/IPI)
P37765 (/IPI)
P37765 (/IPI)
P37765 (/IPI)
(50 more) |
|
Pseudouridine synthase activity GO:0009982
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
|
20 |
P32684 (/IDA)
P32684 (/IDA)
P32684 (/IDA)
P32684 (/IDA)
P32684 (/IDA)
P32684 (/IDA)
P32684 (/IDA)
P32684 (/IDA)
P32684 (/IDA)
P32684 (/IDA)
(10 more) |
|
Pseudouridine synthase activity GO:0009982
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
|
6 | Q9KRK5 (/ISS) Q9KRK5 (/ISS) Q9KRK5 (/ISS) Q9KRK5 (/ISS) Q9KRK5 (/ISS) Q9KRK5 (/ISS) |
|
Pseudouridine synthase activity GO:0009982
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
|
2 | Q8L960 (/TAS) Q8L960 (/TAS) |
There are 7 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Enzyme-directed rRNA pseudouridine synthesis GO:0000455
The intramolecular conversion of uridine to pseudouridine during ribosome biogenesis where the enzyme specifies the site that becomes pseudouridylated without using a guide RNA.
|
80 |
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
(70 more) |
|
TRNA pseudouridine synthesis GO:0031119
The intramolecular conversion of uridine to pseudouridine in a tRNA molecule.
|
20 |
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
P32684 (/IMP)
(10 more) |
|
RNA modification GO:0009451
The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
|
12 |
Q9KPY9 (/ISS)
Q9KPY9 (/ISS)
Q9KPY9 (/ISS)
Q9KPY9 (/ISS)
Q9KPY9 (/ISS)
Q9KSS7 (/ISS)
Q9KSS7 (/ISS)
Q9KSS7 (/ISS)
Q9KSS7 (/ISS)
Q9KSS7 (/ISS)
(2 more) |
|
RRNA modification GO:0000154
The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically.
|
6 | Q9KRK5 (/ISS) Q9KRK5 (/ISS) Q9KRK5 (/ISS) Q9KRK5 (/ISS) Q9KRK5 (/ISS) Q9KRK5 (/ISS) |
|
Maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) GO:0000488
Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule from the pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript.
|
2 | Q8L960 (/IMP) Q8L960 (/IMP) |
|
Maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) GO:0000489
Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript.
|
2 | Q8L960 (/IMP) Q8L960 (/IMP) |
|
Plastid translation GO:0032544
The chemical reactions and pathways resulting in the formation of a protein in a plastid. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein; the plastid has its own ribosomes and transfer RNAs, and uses a genetic code that differs from the nuclear code.
|
2 | Q8L960 (/IMP) Q8L960 (/IMP) |
There are 3 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
60 |
P37765 (/IDA)
P37765 (/IDA)
P37765 (/IDA)
P37765 (/IDA)
P37765 (/IDA)
P37765 (/IDA)
P37765 (/IDA)
P37765 (/IDA)
P37765 (/IDA)
P37765 (/IDA)
(50 more) |
|
Amyloplast GO:0009501
A plastid whose main function is to synthesize and store starch.
|
2 | Q8L960 (/TAS) Q8L960 (/TAS) |
|
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
|
2 | Q8L960 (/IDA) Q8L960 (/IDA) |
